RNA id: AMCG00002267


Basic Information

Item Value
RNA id AMCG00002267
length 2173
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00002267
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9630130 ~ 9637266 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAACTGTTGTAACCCCAGTATGTACAATAGTTTGTTAGTGTTTTTACGTACATGGCAAACGATACATTGGTGCAAATGGATGTTTCAGATGAACAAAGTGAATTCACTCATACACAGAAGCTGAAAGCTGCGGTGCACTACACTGTCGGGCAACTTTGTAAAGAAGTAGAGGAAGAGAACCAAGTGCACTTCAGCAAACAAGTTATCGCAGCCATTGCGGAGACCACATTCAGACAGTGTGatatttttgcAAAAGATCTTGAGGCATTTGCAAGGCATGCAAAGAGAACCACAGTGAACACGGAAGATGTCAAACTTGCAGCGAGAAGGAGCAAAGCACTGTCCAGTTACATCACAAAGAAGAGCGAGGAACTGATCTCCAGTAACCAGGAACAGAAGGAGAAAAGGAAGAAGAATGCAGGGAAAGGGAAGAAAAGCAGCGAGGCTTAGGTGGAAACACATCTGGCATTGGAGCTCTCAAGTAACTACACTTCTATCATAAAATAGGCATTTAGATTAGGCCCAATAAAATTCCcataaaaaattatacattccACAGCCACACCTCTTTCCTTAGCTGTGTCTGAAATGGACTAACAGGTGGTGTGTATTAATGAATGTTAAATTGATTCTAACAAAGACTTCTGTAGCAAACAGTTTGTTGCTTTGTTACATTTTCCTACATTACTATTTACAATTATTGTGATTACTTCATGATACTTTTTAAGAGTTTTGCTTATTTAAGGTCCTTGTACCCTGTTACAGTGTGAGAGGTGATGGTGGCTGTGGTATGACAGACTCAGACATGACTatggtaaatatataaattaaagaaaagcattagCTTCTAATAATAAACCAATACTTATATTTGCAGCACAAAGAGAACATTTCTGTGGCATGTAGTATGGAAATGGTACTCAGTGCACTTAGCAtagggttgttgttttgtgtttttcctaatgtgttaatgtttcactctttatgtaaataaatgttactttGCTTGGCATTTCTATTTATGCCTACGGTTTAATTACttagcaaaaaagaaaaagacaacataaacgcatttatgtaattaaaagcatttgagGCAGGAAtatgcactttatttacaataattgcTGATATCCTGAAGAGGGTGCATTAAAACGGATTAGATTATAATAGGGCCTTGGAGGAAAAACTGAAGGGAGCAGTGCGCTgccctgtgtttgtgtcagtaCGGGTGCTGGGTGTCGGACAGATGAAGCTGGAAAGGTTACTGTCCCTCTCAGTTACAGGGAAGGAGGCTGTTCAATAATGCAGGAAGTAACAGCTGATGAGAGCTGTATACAATGAACCCTGCTCTGGAGTTTACATTTTAGCTCCCAAAAGAGCAACTATCTACCAAAGTTAATGGCTGTAATTGTAAGTGGATGGAAATTCACAGTATTTATGCAAATCTTGTTACTCTTCTCTGTGCCATCAGCTCATTCTGATTCATCCATATTTCAGCATATCAATTGCAATTTGCTTGAGGTCTTGGACTGCAGTAGCTTGTGTTTTTCTGCATGCAAAACCCTTCTCTAAGTGTTTCTGTAcatgcattatatttaattcCAGGCTCTGACTGACCCATGCAAGTGATTAAATGATTTGTTCATCTTTCAACTGCCTAACATGTCAGGCTATGGCAGGGTGTAGTGTCTGAGTTTCGCTAACTAACCCTCCTGATGAGATCAAGAGCTGTAACCCTTCAGCTCAGTGGTCCCCAACCTGTCTACTGACCGATCCTGAAGCCTTACAGAGTAGATCTTCAGACAACTTGgcagcaaaacaacaacttgcAAATCCCCACCCACGCTCAACAGTGTAGAACGCAAGACTTGTGTTAAACATAAAATAGCTCTTCTTCTTGGTGACCGCTGCTTTAGATATATTGGACAGTACATCACTTAGGCAATCAGAATTCACTGGGTGGTACTACAGTTAGCCTAATATCTCCACAGTATGTGCTGTATTTTACATACAACAATCCACCTGAATAGTGAACTGCTGCATTGGCAAGCTAACTTGAATAAGCCATTCCTTTTGTTTATCTTGTTCTAGCACCCCAGTGGTATGTATTTTGTCACtctcttaaataaattaataaattaaagttgtctgataatacaatatcaaaa

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11511 APITD1, CENPS, MHF1; centromere protein S

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153025 lncRNA downstream 8658 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 15843 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 342543 9283969 ~ 9287587 (-) True G122037
TU152969 lncRNA downstream 416701 9138447 ~ 9213429 (-) True G122019
TU152874 lncRNA downstream 611803 9018126 ~ 9018327 (-) True G121935
TU153107 lncRNA upstream 120159 9757425 ~ 9775995 (-) False AMCG00002275
TU153141 lncRNA upstream 210969 9848235 ~ 9851376 (-) True G122131
TU153259 lncRNA upstream 585947 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 642486 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 1113145 10750411 ~ 10750781 (-) True G122302
AMCG00002271 mRNA downstream 451 9628650 ~ 9629679 (-) True AMCG00002271
AMCG00002265 mRNA downstream 10003 9608750 ~ 9620127 (-) True AMCG00002265
AMCG00002263 mRNA downstream 273160 9309416 ~ 9356970 (-) True AMCG00002263
AMCG00002259 mRNA downstream 421431 9200586 ~ 9208699 (-) True AMCG00002259
AMCG00002260 mRNA downstream 436701 9193199 ~ 9193429 (-) True AMCG00002260
AMCG00002270 mRNA upstream 5980 9643246 ~ 9650610 (-) True AMCG00002270
AMCG00002269 mRNA upstream 24242 9661508 ~ 9692975 (-) True AMCG00002269
AMCG00002268 mRNA upstream 56494 9693760 ~ 9725266 (-) True AMCG00002268
AMCG00002275 mRNA upstream 120347 9757613 ~ 9801108 (-) True AMCG00002275
AMCG00002277 mRNA upstream 165042 9802308 ~ 9807298 (-) True AMCG00002277
TU152605 other downstream 1790719 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5410253 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5843586 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5913878 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 6502186 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 194645 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 204829 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 1887627 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2030489 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2094351 11731617 ~ 11734324 (-) True G122597

Expression Profile