RNA id: AMCG00002270


Basic Information

Item Value
RNA id AMCG00002270
length 1441
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00002270
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9643246 ~ 9650610 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAGACATTGCCCTTATTGGCCTCGCTGTGATGGGCCAGAACCTGGTCTTGAACATGAACGACCATGGTTTTGTGGTGTGCGCCTTCAACAGGACAGTGTCTAAGGTCCAGGACTTCCTCCAGAACGAGGCCAAAGACACCAAGGTGGTAGGAGCGCAGTCCTTGGAGGACATGGTGTCCAAGCTGAAGAAGCCACGCCGCATTGTCCTGTTGGTGAAAGCTGGCCAGGCCGTGGATGACTTCATTGACAAACTGGTGCCTTTACTTGAACCAGGAGACATCATCATTGATGGAGGCAACTCTGAATACAGAGACACTACTCGTCGGTGCAAGAGCCTGAAGGACAAGGGCCTGCTGTTTGTGGGCAGCGGGGTGAGCGGGGGTGAGGAGGGGGCACGGTATGGACCCTCACTGATGCCCGGGGGACACAAGGAGGCCTGGCCACAtattaaagacattttccaGAGCATTGCTGCTAAAGTTGGAACAGGAGAGCCTTGTTGTGACTGGGTGGGCGATGAAGGTGCAGGTCACTTTGTGAAGATGGTGCACAATGGCATTGAATACGGGGACATGCAGCTCATCTGCGAGGCCTACCACCTGATGAAGGACGTCCTCAAGATGGACCACGATGAGATGGCCAAGGCATTTGATGACTGGAACAAGACAGAGCTGGACTCCTTCCTGATCGAGATCACCGCCAATATCCTGAAGTATAGGGACTCTGACGGGAGCCACTTACTGCCCAAAATAAAGGACTCCGCTGGCCAGAAAGGCACTGGGAAGTGGACAGCAATCTCTGCCCTGGAGTATGGCACCCCTGTCACTTTAATTGGTGAGGCTGTCTTTGCCAGGTGTCTGTCATCCCTGAAAGATGAAAGAGTGCAGGCCAGTAAAATCCTCAGCGGACCCCAGGGAGCGGTGTTTAAAGGGGACAAGGCTGGATTCCTGGAAGACATCCGCAAGgcTCTGTATGCCTCCAAGATAATCTCCTATGCCCAGGGATTCATGCTTCTTCGGCAGGCAGCCATAGAGTTTGGCTGGACTCTCAACTATGGAGCCATTGCACTCATGTGGAGGGGGGGCTGCATAATCAGGAGTGTTTTCCTGGGAAAGATCAAGGAAGCGTTTGACCGGGACTCTGAGCTGCAGAGCCTGCTACTCGACACCTTCTTTAGCAATGCAGTGCAGGACTGCCAGGAGTCGTGGCGTCGAGCCGTTAGCACAGGAGTCCAGCAGGGCATCCCCATGCCGTGCTTTACCACAGCGCTCTCCTTCTACGATGGTTACAGACACAACATGTTGCCAGCCAACCTCCTCCAGGCTCAGAGAGATTACTTTGGCGCACACACTTACGAGTTGCTGTCAAAACCTGGAAAATTCATCCACACAAACTGGACTGGCCACGGGGGAAACGTCTCCTCATCCTCCTACAATGCT

Function

GO:

id name namespace
GO:0006098 pentose-phosphate shunt biological_process
GO:0050661 NADP binding molecular_function
GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity molecular_function

KEGG:

id description
K00033 PGD, gnd, gntZ; 6-phosphogluconate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153025 lncRNA downstream 21774 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 28959 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 355659 9283969 ~ 9287587 (-) True G122037
TU152969 lncRNA downstream 429817 9138447 ~ 9213429 (-) True G122019
TU152874 lncRNA downstream 624919 9018126 ~ 9018327 (-) True G121935
TU153107 lncRNA upstream 106815 9757425 ~ 9775995 (-) False AMCG00002275
TU153141 lncRNA upstream 197625 9848235 ~ 9851376 (-) True G122131
TU153259 lncRNA upstream 572603 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 629142 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 1099801 10750411 ~ 10750781 (-) True G122302
AMCG00002267 mRNA downstream 5980 9630130 ~ 9637266 (-) True AMCG00002267
AMCG00002271 mRNA downstream 13567 9628650 ~ 9629679 (-) True AMCG00002271
AMCG00002265 mRNA downstream 23119 9608750 ~ 9620127 (-) True AMCG00002265
AMCG00002263 mRNA downstream 286276 9309416 ~ 9356970 (-) True AMCG00002263
AMCG00002259 mRNA downstream 434547 9200586 ~ 9208699 (-) True AMCG00002259
AMCG00002269 mRNA upstream 10898 9661508 ~ 9692975 (-) True AMCG00002269
AMCG00002268 mRNA upstream 43150 9693760 ~ 9725266 (-) True AMCG00002268
AMCG00002275 mRNA upstream 107003 9757613 ~ 9801108 (-) True AMCG00002275
AMCG00002277 mRNA upstream 151698 9802308 ~ 9807298 (-) True AMCG00002277
AMCG00002276 mRNA upstream 179909 9830519 ~ 9833088 (-) False AMCG00002276
TU152605 other downstream 1803835 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5423369 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5856702 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 5926994 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 6515302 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 181301 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 191485 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 1874283 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 2017145 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 2081007 11731617 ~ 11734324 (-) True G122597

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044253 True 1914 mRNA 0.48 12 NC_007134.7 29381441 ~ 29394505 (-)