RNA id: AMCG00002272


Basic Information

Item Value
RNA id AMCG00002272
length 2310
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00002272
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9844205 ~ 9851312 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCCGTCCTTTCGGCTCCACCAATCCCGCACAAGCCGGGCTGTTACCCCGCCTCTTGAGGAAACACAAAAGGCATGTTTCTGCTGGACCGCCTCGTTTCGTGTTTCTAGAAGGAATTCCATTCGAGGGATTGGTGCGTTCGCCTGTTCATACATCCCAGTTTCCCACTCACAGATGTCCAACATGTTTCGTATAGTCGCTCAATCCGTTGCAGTATTTCTGTTAGTTTTCGTTATTTTAACAAACTGGGTATTTGTAAAAAGTGCGGAAGCGGTCAACGGGGCGTACAGGAGAATCTGCAAATAGAATCGCAACACAGCAACGACAACAGACCTTCTCTGCAAAGTCAAATTATTGTGGTGACTTTTGTGACGATCGTTCTTGTCCCTCAACTATACGTTCTAATAAGACCCAAATCAGCCCGATTCTGCCAAAAACCTCTTCTGGGTAACCTGACATGTTCTATAGCCCTCACATTCATGGCATCAGTACTACTGATCTAGGGTTTGCGGTGGTGCTAACGCTAAAGGATCCTATCCCTCAGGCCCTTAAAGCAGCTTTCCATGCTTTCGGAGTGGCTTCCTTCACGGCGGGGTTGTGCACCACTGTCCTCACTGCCAGCGCAGCTCCGTGTgcAAAAACAACTCCTGAACTATACTACCTATCCTTAATGCTATCAGTGGGTAGTATGCTGGCTACAGGGTTTTTCATGGCCATGGGGGGTTTCTGGGCTGTTAATCAGCTGTATCCCTGGTCAGTGTTGAACCTGCGCTCCAGGACTGGGGTTTGCCTTGAGCCCGTCAGCAGCTGCTCCTGTCTCTGGCACATCTGACCGCACATCTGACCTCTCACCGCATCACAGCCCCATCATACTGTGAGCCTTCTCTCCATGGCAACCCCCTAGCAACCAGGGCAGGCTGGAAAATTCCACCTGTGATCACCGAGCTAGAGAACGGCACGGCTCCTCAGCAGAGCGGCTTGACAAGATGCACGCCAGCTATTAATTATTCACCCATTCTGCAATACAGACTGCCTTAGATTTAAGTCAGATCCTAAGATGCATCTTTCAAGCCACAAAAACAGAGAGACTTCTGGAAGGGGTTCAACCAAGTGGCTGTTTTGTATTCTGTAGATATTATACAGCAGCTGCAGACTAGAAGGAAAGTGCAGTAGGTTGGTGCCTAAATGCAATCGCAAAACGTGCCTCCTTTTAGACTTAAATCAAAGGAACGCCCAGGCATTCTTATCATGAAACCGCCATGCTGATAGGACACAATGTGCATGTGTTCCCTCAGTCTCACGCCTGAAGTTTGATTTCATGAGAGTGGTTTGTTGTGACAAATTAAGATAACGGTGCTTCCACGAGTTGAGCTCTGGGGAATATCTTACGTTTTATTTCAATTGCCAAACAGCATTTCAGTTTAGCTACTGTCACCACTGCACAGCTGATAACTTACTCCTGGTAAATGATCTCTGCACATGAAGTTGAGGTAGAAGAACTGAGATGGGCATCTTGCAGGTGTGCTCGTGTCTCTCAAAATATTCCTTTCTCAGTTTTCTATGTAGCATAGAAATTATGATTCACTTTGAAACTTGAATGGAAAATAGTGAGTTTCTATAAAACCTGATGAATTCTATTGAATCATATCTCAGGAATTGTTCAAGGTAAACctactgtttttatgtttttttatctaTATACGGCAAGACACACCAATGCCCTTAAAATAATCTCTCCACTGCCACACAATATGGTAAAGACTGACAATTTCCTCCCTGGGCACTCTAcattccagaaaacaaaaaagcattccAGTTCAGTCTTCTTTAAACTTACAGATAAAATACATAGCATACACTTGCAGGTTTTCTACTATTCAAGAGtctaaaagtattttgaaataacacattttgtatttttgttttctttttttgggacGATAAAGATCAAATGTATAGCACTGACTTTATTGAGGACCAAAACTACTTGTATTTATACAGATCTAACCTTTTATTACAATAGTATTTTAGCCGAgtgctttgtttgtttacaaaatgACTGTTACTGAATAACTATATTAACTGCTTCCAAATGACACACCACTGAAAAAGTAGTATCGATGGAGTAAcctaaatacttattttgtatgtCACAATAAATCCTCAGTAttactgttgtttgttttgctgttgcttctgtacagtgtaaaataaaattgtttagaCCATACTGTTTACCAGCACCCAAGATCTTTTCTTGGGTGTCTTTTTCCTTGTGACAGTCAATAAACATATCTCCCTTTAACTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153125 lncRNA upstream 13527 9829754 ~ 9830678 (+) True G122119
TU153071 lncRNA upstream 85144 9693716 ~ 9759061 (+) True G122086
TU153035 lncRNA upstream 215372 9628598 ~ 9628833 (+) True G122063
TU153022 lncRNA upstream 217984 9625244 ~ 9626221 (+) True G122058
TU152945 lncRNA upstream 281614 9542615 ~ 9562591 (+) True G121999
TU153135 lncRNA downstream 11644 9862956 ~ 9898880 (+) True G122126
TU153225 lncRNA downstream 228435 10079747 ~ 10132200 (+) True G122198
TU153270 lncRNA downstream 472217 10323529 ~ 10326651 (+) True G122236
TU153350 lncRNA downstream 901366 10752678 ~ 10753881 (+) False AMCG00002296
TU153390 lncRNA downstream 1019461 10870773 ~ 10927943 (+) True G122328
AMCG00002266 mRNA upstream 188447 9654733 ~ 9655758 (+) True AMCG00002266
AMCG00002264 mRNA upstream 219511 9619457 ~ 9624694 (+) True AMCG00002264
AMCG00002262 mRNA upstream 559772 9253274 ~ 9284433 (+) True AMCG00002262
AMCG00002258 mRNA upstream 658642 9173970 ~ 9185563 (+) True AMCG00002258
AMCG00002261 mRNA upstream 691295 9151395 ~ 9152910 (+) True AMCG00002261
AMCG00002274 mRNA downstream 2238 9853550 ~ 9863089 (+) True AMCG00002274
AMCG00002273 mRNA downstream 22035 9873347 ~ 9874094 (+) True AMCG00002273
AMCG00002278 mRNA downstream 99694 9951006 ~ 9971665 (+) True AMCG00002278
AMCG00002287 mRNA downstream 449995 10301307 ~ 10304361 (+) True AMCG00002287
AMCG00002290 mRNA downstream 514837 10366149 ~ 10376762 (+) True AMCG00002290
TU152752 other upstream 1082126 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 2447644 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3241597 6586654 ~ 6602608 (+) False AMCG00002190
TU152257 other upstream 3241597 6586654 ~ 6602608 (+) True AMCG00002190
TU151873 other upstream 4620707 5218830 ~ 5223498 (+) True AMCG00002152
TU153306 other downstream 716600 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 1525628 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1777700 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 1837288 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1984127 11835439 ~ 11836169 (+) True G122582

Expression Profile