RNA id: AMCG00002274


Basic Information

Item Value
RNA id AMCG00002274
length 654
RNA type mRNA
GC content 0.53
exon number 7
gene id AMCG00002274
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9853550 ~ 9863089 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTCCCGGGGGAAATCAGAAACCacgaaattaaaacaaaacatggaggAGCAGCTGGACAGGCTAATGCAACAACTGCAGGACTTGGAGGAGTGCAGGGAGGAGCTTGAGGAAGATGAATATAAAGAGACCAAAAAGGAGACTTTGGAACAGCTAAGCGAGTTCAATGAGTCCCTGAAGAAAATTATGTCGGGGAACATGACTTTAGTGGATGAACTCGGCGGAATGCAGCTgGCAATCCAAGCAGCTATCAGCCAGGCCTTCAAGACCCCCGAGATGGACAGAGATGTCATGGTGGGGAAGCTGCCCAGGGATGTTTACACCCAGCAGAAAGTTGAGATTCTCATGGCCCTGAGGAAACTAGGAGAGAAGCTGACGGTGGAAGATGAGTCGTTCCTTTCTGCCAATGCTAGCGCCACCCTGAGCCAGTTTGAGAAACAGTGGAATCAGCGCCCCCCAGCGGCAGACAGGGCTCACGGCGCGGCAGGAACTGATTCAGCGCCCAGGAGCCTCAGTGTGAGTCACGCAGCTCCGACTCGCTCTACAGACTGTCGGGATGTGACCCCGGAACAGGACGCCTCCTCAGAAACACAACACACCATTCAAATACAAggcaggagaagaaaaaaaaaagcggaTCTGGAGCAGGAG

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007417 central nervous system development biological_process
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153132 lncRNA upstream 4538 9844280 ~ 9849012 (+) False AMCG00002272
TU153125 lncRNA upstream 22872 9829754 ~ 9830678 (+) True G122119
TU153071 lncRNA upstream 94489 9693716 ~ 9759061 (+) True G122086
TU153035 lncRNA upstream 224717 9628598 ~ 9628833 (+) True G122063
TU153022 lncRNA upstream 227329 9625244 ~ 9626221 (+) True G122058
TU153225 lncRNA downstream 216658 10079747 ~ 10132200 (+) True G122198
TU153270 lncRNA downstream 460440 10323529 ~ 10326651 (+) True G122236
TU153350 lncRNA downstream 889589 10752678 ~ 10753881 (+) False AMCG00002296
TU153390 lncRNA downstream 1007684 10870773 ~ 10927943 (+) True G122328
TU153467 lncRNA downstream 1471842 11334931 ~ 11348638 (+) True G122389
AMCG00002272 mRNA upstream 2238 9844205 ~ 9851312 (+) True AMCG00002272
AMCG00002266 mRNA upstream 197792 9654733 ~ 9655758 (+) True AMCG00002266
AMCG00002264 mRNA upstream 228856 9619457 ~ 9624694 (+) True AMCG00002264
AMCG00002262 mRNA upstream 569117 9253274 ~ 9284433 (+) True AMCG00002262
AMCG00002258 mRNA upstream 667987 9173970 ~ 9185563 (+) True AMCG00002258
AMCG00002273 mRNA downstream 10258 9873347 ~ 9874094 (+) True AMCG00002273
AMCG00002278 mRNA downstream 87917 9951006 ~ 9971665 (+) True AMCG00002278
AMCG00002287 mRNA downstream 438218 10301307 ~ 10304361 (+) True AMCG00002287
AMCG00002290 mRNA downstream 503060 10366149 ~ 10376762 (+) True AMCG00002290
AMCG00002289 mRNA downstream 521336 10384425 ~ 10392661 (+) True AMCG00002289
TU153130 other upstream 2244 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 4538 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 1091471 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 2456989 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3250942 6586654 ~ 6602608 (+) False AMCG00002190
TU153306 other downstream 704823 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 1513851 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1765923 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 1825511 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1972350 11835439 ~ 11836169 (+) True G122582

Expression Profile