RNA id: TU153107


Basic Information

Item Value
RNA id TU153107
length 1709
lncRNA type sense_over
GC content 0.38
exon number 3
gene id AMCG00002275
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9757425 ~ 9801108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATTTAAAGATCCTTTGATGGATACACTGATGTCTGACCCCGTGCGGTTGCCCTCCGGGAACATCATGGACCGGTCCATAATCCTGCGCCACTTGCTGAACTCGCCCACAGACCCCTTCAACCGGCAGCCCCTGACTGAGAACATGCTGGAGCCAGTCCCAGAGCTGAAAGAACGGATCCACGCCTGGATGAGGGAGAAACACCACAGCGGGCAATACTGCCAGTGAAGCCGTGACTGTGGTCTCTAAGGGAATGCTGATCGCCACTCAAGGTCTGGAAGAGTAACAACGTGATGAAGCAGAGCAGCCcgattttgatttttttttttttttttttttttttttctcctttttccttTGAGGACTGATGCCTTTAAGGCTGACAATCCTAAAAGTAATTACAAACTAAAATGATAGaatttttaaaggtttttgttCACgactttgtatatatatatttaaattgcaaaacatatacaaaagtGAGGGTAAACTGTTAAGGATCAAGTTTactaaaagaaaggaaaaccatAAAACATCACCTTTTTGAGGTTTCACTGCTTGAAGACCTATATTAGTAAAGTTAACTGGATGTGGGCAGCAAAAAACTAACAGTAAGCTTTACaatcattttactgtatttttacagtacTTCTGCTTCAATATATcagttattttttcccccataagGATTTTTTGCCCAGAAACATTTTACGCTAGCAAGGTAGTCCCTTATTTCCTGCACTACTTTAGTGTTAATAATACCAAAGTGAACAAGAAGAGCCAACATTGTAAGAGCTAAACGAGTGTAGAGGCATTATGTGTGCGCCTGTTGTGTAAAGTGTTGGTCAGTGCCACGCCATTCTCTACCACCGGCTTGTGTGCTGAAATGACAACTTTGGAAAGAGTGCAAGAGCCACAGTCGAGTCCTCAGACCTTTCAAGTGAGTGGGGAGACCTTTGCAGTTACTGCGCTAATTCatgttttagaaaaatattaagACAAATTGGATTGCTTTGACTCTTTTAAGTGTATAACATGGAACACGCATTGGTTTCAGAAAAATGGTAAGTAttcaagtaatttattttattttttcatttaatttttttccctggaagggtgggggggggggtactttAATGAAGGGTGTGTCACCTTATTCAGCACATCTGTTTCCTGTTATGGACAGCGAATTCCACATTGTGATGTTGAGTTTGGCTGCTGTTTGGGTGGCAGTAGTGCCTGTGTCCGCTTAAAGAAGGTTAAAAGAAAGGGAGCGCTCTAAATGTTTTACATCAGACTTCCgagtttttttcagtttttttttttttttccttttgttttttttttttttttttttaaacactgctcTTTGACCACTCACTTTCTTGTGAATTATGAATAAATGATttgtaatcatattttaaagactGTACAGAAATTGTCATTTGCCACAAACTCTGTTTTGGGATCCCAGACTTTAAATTCTAATAAATGGTTATGCACACTCGGACACaactggtgttttttgttttaaatgagtcatttattttttatgattgtgaATCCAGCCCATCCCCTTGGCAATAACACTGATGCTATAATAAATTTGAGAGTTTCAGAACATAGAAGTCTCTAATATTGACTTACTGCCCCTCCTGTTACCCAGTAGTAATATACTTAAATCCTCAAAGGCTAATTTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153025 lncRNA downstream 135953 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 143138 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 469838 9283969 ~ 9287587 (-) True G122037
TU152969 lncRNA downstream 543996 9138447 ~ 9213429 (-) True G122019
TU152874 lncRNA downstream 739098 9018126 ~ 9018327 (-) True G121935
TU153141 lncRNA upstream 72240 9848235 ~ 9851376 (-) True G122131
TU153259 lncRNA upstream 447218 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 503757 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 974416 10750411 ~ 10750781 (-) True G122302
TU153380 lncRNA upstream 1036191 10812186 ~ 10813876 (-) True G122319
AMCG00002268 mRNA downstream 32159 9693760 ~ 9725266 (-) True AMCG00002268
AMCG00002269 mRNA downstream 64450 9661508 ~ 9692975 (-) True AMCG00002269
AMCG00002270 mRNA downstream 106815 9643246 ~ 9650610 (-) True AMCG00002270
AMCG00002267 mRNA downstream 120159 9630130 ~ 9637266 (-) True AMCG00002267
AMCG00002271 mRNA downstream 127746 9628650 ~ 9629679 (-) True AMCG00002271
AMCG00002277 mRNA upstream 26313 9802308 ~ 9807298 (-) True AMCG00002277
AMCG00002276 mRNA upstream 54524 9830519 ~ 9833088 (-) False AMCG00002276
AMCG00002279 mRNA upstream 60923 9836918 ~ 9844326 (-) True AMCG00002279
AMCG00002280 mRNA upstream 201781 9977776 ~ 10006571 (-) True AMCG00002280
AMCG00002286 mRNA upstream 248424 10024419 ~ 10030406 (-) True AMCG00002286
TU152605 other downstream 1918014 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5537548 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 5970881 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 6041173 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 6629481 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 55916 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 66100 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 1748898 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1891760 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 1955622 11731617 ~ 11734324 (-) True G122597

Expression Profile