RNA id: AMCG00002277


Basic Information

Item Value
RNA id AMCG00002277
length 462
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00002277
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9802308 ~ 9807298 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCTTCAGCATGGCTGTGAATTACACTGGCACCTGGGACATGGACAGCAATGTCAACTTTCAAGGTTACATGATGGCGCTTGGCATCGATTTTGCAACACGGAAGATTGCAGGCACGCTGAAGCCTCAGAAGGTGATTGAGCAAAACGGGGATGTCTTCACGATTAAAACGCTCAGCTCGCTCAGGAACTACAGCTCTTCATTTGTTGTAGGGGAAGAATTTGAGGAGGACACTAAGGGACTGGACAACAGGAAATGCAAGTCTCTGGTGTCCTGGGACAATGGGAAGCTGGTGTGTGTTCAGAAGGGAGAGAAGAAGAATAGAGGTTGGACACATTGGATCGAAGGCGACGATCTACACCTGGGACTCAGACGCAGGGCCTTGGAGGGGCCTGCCAAGCCTGCGGGGCTCTTATCCACCCCTCTGCCGCAGCTGTTCGCTGAAGTGTTGTCGAGTGTACAC

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153107 lncRNA downstream 26313 9757425 ~ 9775995 (-) False AMCG00002275
TU153025 lncRNA downstream 180836 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 188021 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 514721 9283969 ~ 9287587 (-) True G122037
TU152969 lncRNA downstream 588879 9138447 ~ 9213429 (-) True G122019
TU153141 lncRNA upstream 40937 9848235 ~ 9851376 (-) True G122131
TU153259 lncRNA upstream 415915 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 472454 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 943113 10750411 ~ 10750781 (-) True G122302
TU153380 lncRNA upstream 1004888 10812186 ~ 10813876 (-) True G122319
AMCG00002275 mRNA downstream 1200 9757613 ~ 9801108 (-) True AMCG00002275
AMCG00002268 mRNA downstream 77042 9693760 ~ 9725266 (-) True AMCG00002268
AMCG00002269 mRNA downstream 109333 9661508 ~ 9692975 (-) True AMCG00002269
AMCG00002270 mRNA downstream 151698 9643246 ~ 9650610 (-) True AMCG00002270
AMCG00002267 mRNA downstream 165042 9630130 ~ 9637266 (-) True AMCG00002267
AMCG00002276 mRNA upstream 23221 9830519 ~ 9833088 (-) False AMCG00002276
AMCG00002279 mRNA upstream 29620 9836918 ~ 9844326 (-) True AMCG00002279
AMCG00002280 mRNA upstream 170478 9977776 ~ 10006571 (-) True AMCG00002280
AMCG00002286 mRNA upstream 217121 10024419 ~ 10030406 (-) True AMCG00002286
AMCG00002285 mRNA upstream 259614 10066912 ~ 10076666 (-) True AMCG00002285
TU152605 other downstream 1962897 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5582431 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 6015764 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 6086056 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 6674364 3113442 ~ 3127944 (-) True AMCG00002094
TU153137 other upstream 24613 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 34797 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 1717595 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1860457 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 1924319 11731617 ~ 11734324 (-) True G122597

Expression Profile