RNA id: TU153139


Basic Information

Item Value
RNA id TU153139
length 756
RNA type TUCP
GC content 0.50
exon number 4
gene id AMCG00002279
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9836918 ~ 9853075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGATTTGCcgtttattaaatgtataacttggtactgatttaaaaatatatacattccttacctttattttattttgttggcttTGTCGGAGCAGTTTTGATTATTTGTTGTCACTGGTAAGGGGGAGGAGTAAGACGTTACACCAACTTCCGGTCCATTCTGACCAATCACAATGCAGCTGGTGTCTTTTTCGGTGTAACACGAATGTAACTCGACCTGAAGACAACAACTGAAATTGACACGTCGTTAAAatccTGCATTAGTTTACTGTCCGAGCTGCAGCCCTGGTTGTGGTGGTCGGGTCTGATGTGATGGAGAACCGAGCCGACAGGACCAAAGTGGTGCTCCTGGCCTGCGGGTCCTTCAACCCCACCACGCACATGCACCTGCGGATGTTCGAGCTGGCGCGGGATCACCTGCAGCACAGTGGTAATTACAAAGTTGTAAAAGGCATAATTTCCCCGGTTGGCGACAGTTACAAGAAGAAGGGCCTGATTGAAGCCCACCACCGAATTGCCATGGCTACCCTCGCCACAGAGAGCTCTGACTGGCTGAAGGTGGACCCCTGGGAGGGAGAGCAGGCAGAGTGGGTGGAGACAGCAAAGGTGATCAGGCACCACCAGGAGGAGCTGTATACAGGGGAAGTTTCAAAGTGTGAAGACGAAGTAGACACTGTGAAAATCGGCAGGAAACGGCGGTGGGAGAGCAGAGAGGGAGTGCCTGTGAAGCAGGAGTCCCAGCCCACGAGTAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153107 lncRNA downstream 66100 9757425 ~ 9775995 (-) False AMCG00002275
TU153025 lncRNA downstream 220623 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 227808 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 554508 9283969 ~ 9287587 (-) True G122037
TU152969 lncRNA downstream 628666 9138447 ~ 9213429 (-) True G122019
TU153259 lncRNA upstream 370138 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 426677 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 897336 10750411 ~ 10750781 (-) True G122302
TU153380 lncRNA upstream 959111 10812186 ~ 10813876 (-) True G122319
TU153396 lncRNA upstream 984729 10837804 ~ 10847201 (-) False AMCG00002301
AMCG00002276 mRNA downstream 9007 9830519 ~ 9833088 (-) False AMCG00002276
AMCG00002277 mRNA downstream 34797 9802308 ~ 9807298 (-) True AMCG00002277
AMCG00002275 mRNA downstream 40987 9757613 ~ 9801108 (-) True AMCG00002275
AMCG00002268 mRNA downstream 116829 9693760 ~ 9725266 (-) True AMCG00002268
AMCG00002269 mRNA downstream 149120 9661508 ~ 9692975 (-) True AMCG00002269
AMCG00002280 mRNA upstream 124701 9977776 ~ 10006571 (-) True AMCG00002280
AMCG00002286 mRNA upstream 171344 10024419 ~ 10030406 (-) True AMCG00002286
AMCG00002285 mRNA upstream 213837 10066912 ~ 10076666 (-) True AMCG00002285
AMCG00002283 mRNA upstream 226082 10079157 ~ 10093103 (-) True AMCG00002283
AMCG00002282 mRNA upstream 336688 10189763 ~ 10197544 (-) True AMCG00002282
TU153137 other downstream 8871 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 2002684 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5622218 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 6055551 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 6125843 3713867 ~ 3716252 (-) True G120907
TU153575 other upstream 1671818 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1814680 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 1878542 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 1995395 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 2018787 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile