RNA id: AMCG00002280


Basic Information

Item Value
RNA id AMCG00002280
length 3511
RNA type mRNA
GC content 0.50
exon number 23
gene id AMCG00002280
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 9977776 ~ 10006571 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGTGTGCGGAGTGCAGTGCAGAGGCAGGCGGGTCGCAGTTGTGCAGCTCACATCCTCTGCCAAGACATTAAATGCGGTTGCTGCCAAGTTCGTCGTGTGATAAAAAACTGGTATTAGAAACTCAACAGTCCCGGGCATTAAGGAAATAGTTGGAGAGGAGGAGCAGGCGGGGTGGACATCTTTCGGTTGGGAAAAGCGGATCTTGTAATTACTGCATGCACAACAGGAACGGCAGCCGGTACTTGCAATGCAATGATGGCTAAATGGGACGAGCTGTAAGAGCAACCATTTGCGAGAACAGCAGGGCTGGCTGTAGATGAGCAGTATCCACGATGCCCCCAGGTGTGTACTGCATGCAGGATATCTGGGCAGAAGAGCAGAGCCCGGAGATCATAGTCGACTTCCTCTTGCCAACTGGGATCTACCTGAGCTTCTCTGTGGCCCGTAATGCTACCATTGGAGCCATCAAAAAGTATGTGTGGAAGCAGGCCAAAGCGGAGCCTCTATTCCATGCCCTCAACGACCCCGACGCCTACGTCTTCACGTGCATCAACCACACAGCTgagcaggaggagctggaggatgAGCAGCGGAGGCTGTGCGACGTCCGGCCCTTCTTGCCCATCCTGCGACTGGTGGCGCGAGAGGGGGACCGTGTGGTGAAGCTCATCAACACTCAGATCAGCCTCCTCATAGGCAAAGGTCTGCACGAGTTTGACTCTCTGAAGAACCACGAGGTCGACGAGTTCCGTTCCAAGATAAGCTCCTTCTGCGAGGAGAAGGCTTTGGATCGGCAGATGCTGTCCTGGCAGAAGTGGATGGAGTGTAACTTCCCATGTGAGCTGGAGCCTTGCCCCACGCTGCCGGAGACGGGCAGCCTGAAGTCTCGCAGCAGCAAGAAGCTCATCGTCAATGTCAAGTTCGAATCCAGTGAAGAGAGCTTCACATTTCAGGTTCAACCCCAAGACATTCCCTTAACTCTAATGCAGTCCGCTCTGAAGAAGAAAGCCACGGTCTTCCGACAaatcaaacaggaaaaaatcGAAGATTATACCCTGCAAGTGAACGGGAGGAGTGAatatatttatggaaaataCCCCCTGAGTCAATTCAAATACATCTGTTCCTGTCTGCACAATGGTTTGACTCCTCACTTGACAATGGTGCATTGCTCAACAGTCAGTAAAATGCAGGATGAACAAGGGGGTTTCATCATGCAGGTTTCCAAAAGCCGAACGTCTTCCAAACCGCCTCCATTACCCCTCAAAAAGCAAACCATTTCATCATTGTGGACTATAAAGGAGCCATTCTATATACACCTCATGCAGGGCAGCCGGGTAAATGCAGGTGAAGGAATGAAGCTCGTTGTTCAGGCTGGTCTCTTCCACGGCAGTGAGATGCTGTGTAAGACAGTGACCAGCAATGAGGTGAACGTCTGCTCGGAGCCCCTCTGGGAGCAGAAGCTGGAGTTTGACATCAACATCAATGACCTTCCGCGTATGACCCGCCTCTGCTTCGCACTGTACGCGGTCATCGAGAAGACCAAAAAGCCCCGGTCCACCAAGAAGAAGCACAAGAAGGCTGACTGTCCTTTGGCCTGGGTGAACACCACAGTGTTTGACTATAAGGAACAGCTGAAGACAGGGGATGTTTCCCTTTATACCTGGCCCTCCGTTCCAGatGATAAGGGTGACCTGCTAAGCCCCATGGGTACTGTGGAGTGTAACCCCAACACGGACAGCACTGCTGCACTGATAATTCGCTTCCCGAACATTCGACCCCATCCCATTTATTATCCTTCCTTTGAAAAGATCATAGATTTGGGGAAAAATGGCAAAATGGCAGTGGCGACAAAGGAGGAGTACAAGAAACTGTGCGAAATATTGGAAAACAAGAACTACACAGAGTTCTTCGAGGATGACAAAGAGGTTCTGTGGAAGCTGCGTGATGCGGTCCGATCCAGGTTTCCTGAGAGCCTGGCGAAGCTATTACTCATAACGAAGTGGAACAAGCACGAAGATGTGGCACAGATGATATGTCTCCTGCAGGCATGGCCAGACCTCCCTGCAATCCATGCGCTAGAGCTGCTGGACTACAGCTTTCCTGATCGCAACGTGAGGTCGTTCACCATTAGATGTTTAAGAAAGCTGAGtgaCAATGAACTGTTCCAGTATTTGCTACAACTGGTACAAGTGCTGAAGTACGAGTCTTACTTAGACTGTGATTTGACACGATTTCTGCTAGAAAGAGCTCTGGCCAATAGAAAAATAGGACACTTCTTGTTTTGGCATCTCAGGTCAGAAATGCATGTTCCCTCCGTGGCTTTGAGATTTGGTCTTATTCTTGAGGCCTATTGTCGGGGAACAACTAACCATATGAAAATTTTAATGAGGCAGAACGAAGCCctgaacaaaatgaaatctCTAAACGACTTTGTAAAATCCAGCTCTATGAAGACCTCAAAACAGCAAACCAGAGAGACCATGGCGCTGTACATGAAGCAGGAGACGTACATAGAAGCCATGTCTGATCTCACCTCCCCTCTCAACCCCAGTGTTATCCTCTCTAATATCTGtccAGAGAGATGCAAGTTCATGGACTCCAAGATGAAGCCGCTGTGGCTTGTCTACAGCAACGAGAAGGTGCCAGGAAATAATGTGGGCATTATCTTCAAAAACGGAGATGATCTCCGACAAGATATGTTGACTCTACAGATGATACAGCTCATGGACGTGCTATGGAAGAAGGAGGGTCTGGATTTGagGATGATTCCGTATGGCTGTCTTTCCACTGGAGACAAGACGGGCCTGATTGAAGTGGTCCGGAGCTCTGACACTATCGCCAACATCCAGCTCAACAAAAGCAACATGGCCGCCACAGCTGCCTTCAACAAGGACGCGTTGCTCAACTGGATAAAGTCCAAAAACCCCGGGGATAAACTGGAACAGGCCATAGAGGAGTTCACCCTGTCCTGCGCTGGCTACTGTGTAGCTACGTATGTTTTAGGAATCGGAGATCGACACAGCGACAACATAATGATCAGGGAGACCGGCCAGctGTTCCACATTGACTTTGGACACTTTCTCGGGAACTTCAAAAGCAAGTTTGGCATCAATCGGGAGCGCGTGCCTTTCATCTTAACATACGACTTTGTGCACGTGATTCAGCAAGGACGCACCAACAACAGCGAGAAGTTTGAGAGGTTTCGCGATTACTGTGAGCAAGCTTACAAGATCCTGTGTAGGAACGGGACCCTGTTTGTAAATCTTTTTGCACTGATGAGGGCGGCAGGTCTACCTGAGCTCAGCTCCTCCAAGGACATACAGTACCTGAAGGATTCTTTAGCCCTGGGCAAGACGGAAGAGGAGGCccttaaacatttcaaagtgaaatTTAATGAAGCACTGCGGGAAAGCTGGAAAACCAAAGTGAACTGGATGGCTCATAATGTAGCCAAAGATAACAGATAAAGACTTGCGGCCAAGGCccgtgggggtggggggggttgg

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process biological_process
GO:0048015 phosphatidylinositol-mediated signaling biological_process
GO:0005886 plasma membrane cellular_component
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0035005 1-phosphatidylinositol-4-phosphate 3-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity molecular_function
GO:0016303 1-phosphatidylinositol-3-kinase activity molecular_function

KEGG:

id description
K00922 PIK3CA_B_D; phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha/beta/delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153141 lncRNA downstream 126400 9848235 ~ 9851376 (-) True G122131
TU153107 lncRNA downstream 201781 9757425 ~ 9775995 (-) False AMCG00002275
TU153025 lncRNA downstream 356304 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 363489 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 690189 9283969 ~ 9287587 (-) True G122037
TU153259 lncRNA upstream 216642 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 273181 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 743840 10750411 ~ 10750781 (-) True G122302
TU153380 lncRNA upstream 805615 10812186 ~ 10813876 (-) True G122319
TU153396 lncRNA upstream 831233 10837804 ~ 10847201 (-) False AMCG00002301
AMCG00002279 mRNA downstream 133450 9836918 ~ 9844326 (-) True AMCG00002279
AMCG00002276 mRNA downstream 144688 9830519 ~ 9833088 (-) False AMCG00002276
AMCG00002277 mRNA downstream 170478 9802308 ~ 9807298 (-) True AMCG00002277
AMCG00002275 mRNA downstream 176668 9757613 ~ 9801108 (-) True AMCG00002275
AMCG00002268 mRNA downstream 252510 9693760 ~ 9725266 (-) True AMCG00002268
AMCG00002286 mRNA upstream 17848 10024419 ~ 10030406 (-) True AMCG00002286
AMCG00002285 mRNA upstream 60341 10066912 ~ 10076666 (-) True AMCG00002285
AMCG00002283 mRNA upstream 72586 10079157 ~ 10093103 (-) True AMCG00002283
AMCG00002282 mRNA upstream 183192 10189763 ~ 10197544 (-) True AMCG00002282
AMCG00002281 mRNA upstream 218717 10225288 ~ 10239533 (-) True AMCG00002281
TU153139 other downstream 124701 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 144552 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 2138365 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5757899 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 6191232 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 1518322 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1661184 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 1725046 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 1841899 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 1865291 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile