RNA id: AMCG00002282


Basic Information

Item Value
RNA id AMCG00002282
length 2447
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00002282
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10189763 ~ 10197544 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttcttttttttttttttcctctctctttttaaaaggGGTGGTGAGCCGCACACGGAATATGGGCCAAAAGGTTCCTGGAGGGATAAAGACCGTTGACATGAGGGACCCGGCATTTAGGCCTCTAAAACTGGAGCTGCAGGCCCTCGATTACACTAAGCCTGCTCGGCTGGACATGCTGCTGGACATGCCGTCCGTCTCCCACGATGTCCAAATCCAGCACTCGTGGAACAATGACGACCGGTCACTGAACATATTTGTCAAGGAGgacaacaaattaatatttcaccGGCATCCGGTGGCACAGAGCACGGATGGGATCCGAGGCAAGGTGGGCTACACCCGGGGACTGCACGTTTGGGAGATCAGCTGGGCGATGCGACAGAGGGGCACCCATGCGGTGGTTGGCGTGGCAACTGGTGACGCTCCCTTGCATTCTGTAGGATACACTGCACTCGTAGGAAATAACAGTGAATCCTGGGGCTGGGACCTCGGCAGGAATAAACTCTACTACGACGGCAAAAACCAGCCCAGTAAGACCTACCCGACTTTCTTGGAGCCGGACGAGACGTTCATCGTACCGGACTCGTTTTTAGTGGTTTTGGACATGGATGAAGGTACGCTCAGCTTCATTGTGGATGGACAGTATTTGGGAGTAGCTTTTAGGGGACTAAAGGGGAAGAAGCTGTACCCCGTCGTGAGCGCTGTCTGGGGACACTGTGAAATCAGAATCCGATACATTAATGGACTTGATCCGGAGCCCTTGCCTCTGATGGACCTGTGTCGCCGCTCCGTCCGAGTGGCTTTAGGGAAGGAGCGATTGAGCGAGATCCACGGGCTCCCCTTGCCAGCCTCCCTAAAGAACTACCTGCTCTACCAATGATGATGGGAGTGCCTGCGCCACAGCAAACGGCCGGGCGCGGCATTCCCTTTGAGCTTCTCCTCTCTGATCCCAATCTGTGTGGGCTTTCTtaccacttttattttatttttttactttttggcTTGGTTTCTTATTTTCACCAACTGTTCCAAATAACAACTTGCTTCAAATAATATACTGgaaatatttatggaaaattTACAGGTCACTTTTTATGGATGTGGAATTAAAGGGTTTTTAGTGGTGCTCTTGCCTGTATTTGAGAAGTGCAATGGTTTTGCTGGAACTCCCCAGCTTTGTTGAACCTCTGTCTTCAGTGGTTCctagatgtatttttattccccCCTTTTTAATGTAAGAATGAAGTTCTCCTTGCAGTGCCACCATTAACTTTCCTGTTAACGAAACTTGGATTTCTTTATGGATATGTTTGCTGTGCATTTAGTGTATGAAAAGGCTAGATTTGACCTTTTGAGACCTAAAATAAACTTCgtattaaatgttgtttttagcCAATTTAATGTTCTAAATGGTATCTTGTAACCTGCCGTCTGGTCTGGACTTTGACTACTAGATCCATTAGTAagattttatgtacattttttttttaatcatgcagcattttcacattttaaaagtatgacATTTATATCTGAGGCTCAAGTAAGGTGATTTAATTGACTCGGATCTTACTTATTTTGCTCTTGTATAGCCTCGTGTAAGAAGATGAGCCGTTCCGCTCCTAGAAGCGCCTACACAAACGGACATTGATTGTCGTGACTTAAAGCAGTTACAGAAGAAATTGCTAATCCCCACTGTTTGCACAGGAAGCAGCTGACTGTCCTGAAAACTAATTTGGTCAGCCACAAAGTTGGAGCCTTGAAAGTTTCAGGTTTTGTGCATGCTGGGAAAATAAACCAAGGGACCAAAATTACCCAATTACTCATTGCATCATTTGAAAAGTGCAATTGTTCATCTGTTTCTAGCAGAAGTATTAAATCACTGTGATTTACACTTGGCATATCCATTAAGAAATCCTAATGCTCGTTTTTGTACCAGCCTTTCAGCAGCCTGAATGAGGTCCCAGGAAGAAACTGCACTCATTTTGCTGCAGTGCAAAAGGGTCTCCTTAGTACTGCCCTTGCACTGGGGTTGGACtggaaaatgttgaaaactTGCTGTATAGGTGGGATGCTCCTGCAGGGTGCCTTGTTAATCGTCCACTGTGTGTTGGGGTAGAAGGCAGGATATGCTGCCATGAGGCATTTTTTGGGGgtaaaataacttttataaATCACTTTAGATGCAgcctttttttactttttatttaaaggacTGCTAGTTTCCGCAGGCAAGGTGGTGGTGCGGGGggagtaatatatatattttttttattttacagattttaaagtGCAAAATCTCCTTGtttttggcattttatttttgataagcATGTGCTCCCAGTACTGCTTAATCACCATATTGaagttagttttgttttcccctttttcaGGCCtgcacagttttatttgtatacaatgCTGTAGATAATGTTCGTAACTACC

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K10343 SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153141 lncRNA downstream 338387 9848235 ~ 9851376 (-) True G122131
TU153107 lncRNA downstream 413768 9757425 ~ 9775995 (-) False AMCG00002275
TU153025 lncRNA downstream 568291 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 575476 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 902176 9283969 ~ 9287587 (-) True G122037
TU153259 lncRNA upstream 25669 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 82208 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 552867 10750411 ~ 10750781 (-) True G122302
TU153380 lncRNA upstream 614642 10812186 ~ 10813876 (-) True G122319
TU153396 lncRNA upstream 640260 10837804 ~ 10847201 (-) False AMCG00002301
AMCG00002283 mRNA downstream 96660 10079157 ~ 10093103 (-) True AMCG00002283
AMCG00002285 mRNA downstream 113097 10066912 ~ 10076666 (-) True AMCG00002285
AMCG00002286 mRNA downstream 159357 10024419 ~ 10030406 (-) True AMCG00002286
AMCG00002280 mRNA downstream 183192 9977776 ~ 10006571 (-) True AMCG00002280
AMCG00002279 mRNA downstream 345437 9836918 ~ 9844326 (-) True AMCG00002279
AMCG00002281 mRNA upstream 27744 10225288 ~ 10239533 (-) True AMCG00002281
AMCG00002284 mRNA upstream 42548 10240092 ~ 10244785 (-) True AMCG00002284
AMCG00002288 mRNA upstream 72345 10269889 ~ 10279971 (-) True AMCG00002288
AMCG00002292 mRNA upstream 194182 10391726 ~ 10403880 (-) True AMCG00002292
AMCG00002302 mRNA upstream 558288 10755832 ~ 10789955 (-) True AMCG00002302
TU153139 other downstream 336688 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 356539 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 2350352 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5969886 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 6403219 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 1327349 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1470211 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 1534073 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 1650926 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 1674318 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile