RNA id: AMCG00002283


Basic Information

Item Value
RNA id AMCG00002283
length 2814
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00002283
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10079157 ~ 10093103 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGCACTGCGGAATTTCCTGGCGAGAATCAGCCGGCTGGATCCGAGGGCTGCGGGGAGCACGTTTCCCTTCCTTGAAACCTCAAATAATTTCACATAACGATTGAGTATGTTATGATGAAAGCATAAACATGTCGCAGAAAGATACGCTTTTACATCTGTTCGCTGGCGGGTGTGGCGGCACTGTGGGTGCGATTGTGACCTGCCCCCTAGAGGTCATCAAGACTCGTCTGCAGTCGTCCGGCCTCGCCCTGCGGCCTGTCTTCCAGGTCCAGCTGGGAACTCTCAGTGGCACCGGCGTGATCCGCCCCTCGCAGGTCGCCCCCGGGATGTTCCAGGTGCTCAGGTCAATATTAGAGAAAGAAGGACCAAGGTCTCTGTTCAGAGGTTTGGGACCTAATCTTGTGGGAGTGGCGCCATCCAGAGCAATCTACTTCGCTGCCTACTCCAAGTCGAGGGAGAAGTTTAACGCCATATTTGTGCCCAACAGCGGGCCTGTGCACATGTGTTCGGCTGGGTTCGCAGCTTTCGTTACAAACTCCCTGATGAACCCGGTCTGGATGGTTAAGACTAGGATGCAGCTGGAGAGGAGgGTACGAGGGGTGAAACAGATGAACGCCTTGCAGTGCGCCAAGAATGTGTACCAGACAGAGGGGATACGCGGCTTTTACAGAGGCCTCACAGCCTCATACGCCGGCATCTCTGAGACTATGATCTGTTTTCTCATTTATGAGACTCTGAAGAAAAACCTGGCGGATTGCAAGCTAGAATCTGCGAGCGGCCGTAGTGAGAAAGTGGCTTCAGACTTCTTGGGCCTCATGTTGGCGGCAGCTTTCGCCAAAGGATGTGCTTCTTGCATAGCTTACCCACACGAGGTGATCAGGACGAGGCTTCGGGAAGAGGGCAGCAAGTACAAGTATTTTTTCCAGACAGCGCGTCTTGTGTTCATAGAGGAGGGCTACTCAGCTTTCTACAGGGGACTGTCGGCACAGCTTATTAGGCAGATCCCAAACACTGCCATAGTGCTCTCCACCTATGAGCTTATAGTCCATCTACTAGGAAGCCAAACCAAATAGAGCAGCAAGAGGAACCATGAGACTGAGACGAACCAAATTGAAAACAGCATACAGACAAACAGAGCATGGTGTGCATGGAACAGTTGAAAGTGCTTTTGTGGTTTACTGTTGGATTTTGAAGGAGGACCTTTTTCTGAGGATTTCTTGGACATGTACTTGAATTGAgttaatttcatttcaaagttctaaatacaattaaagaggGGAGGGGCTGTGagcaagacagacagacggacagagagagaaaaacaaattggtgttgtttcattgtgttttctcaccatgtttgtgtaaaataaggtactttttatttctgtatcatCCCCGTATCAGTTGACCAGTAAATCGCAACAAGAACACGTACATGTCAACTAAGAAGTATAGTACCGTGATATCAACGAAGATttacttcagtttattttcatacaaatgtaaaatatccaAAGATGATCagtcaagtttttgtttttttaattttatcatGTTCGAATGCTTGCTTGACAAGTCCACAGAAAGGCCTTGAGGTTTGCTGTAAAGGTACTGgtcactgcccacatggcacTGTACAGAGTTGGCTTACCTGCATAGTGTATTATAGTTCTTAGTTCTGCAGGGGTTCTGAAGATCTATGTGTCTGTTTACCATCCGCACCTTCAGTAGAGTGGCTGCAGGGTGGAAATTCACTTTaaattattactactactgctgacTTTGCCACCTGTCctagaatattttatttgattttatttttttggttacGTTTGTCTGTTtaactgtaacatttattttattgtgaatataattatttcgTCTTGTCTTAGGAAATGCgatattgtgtttttcaaaggaATGAGGACCTAAATGCATATTGAAACagtggtttaataaaaaaagaaaaaaaaaaaacactaatacaTGTTAAATGTGTTACTTTTCAGAGTGTGATTCAAAGAAACCAGTGGCCACACAAACAAGAGTAACATTTGCTTTCCTTTGGGGAAATTATCATTACTTCCAGAACACAATCACACTATTACAAgcatttttctccatttaaatatttttcaccacatttttaaacatgtccTTTGTGCCACTTCACTTTGAACAGGTGCTggtgtattattttcttcaacttCTGATGACAATGAGTAAAGATAGAATCCAACACTGGAATTTCCAAGGAAGAAATTGACATCCTAAATGGTAGAGCAAGTAAATGAGTCTTGGTTCCTGTAGTCCTTACGTCTGCTGCATCTCTCATTTCAGATTTCGGATtccttttgattttcttttatcatTGCAGTCCAAATAAAGAAGACTTAGCCAGAGTGGGCCTGCTGTGTGGTGATTTTATAGGGGTGGGGGAACATTTTGCCTGAACGAGAAGACATTTAGGCTGCAATCAAACAATGTTTATTAGCAGGTCATTTGAGAGTCTTACGGCGAACTGTAATGATGGGAATTGGAGCATGGATGGGAATTGGAGGTCAATAGTGtagagatgtattttctttgctgcAAGATTCCCTGAGGGCAGGATGATATCATACAATGGGTACAATAaaggtttctttattattttgtttatctgGGGGCAGTGTGCAATTTGGAATTGTCTGCATTATGGGTGAATCTGGCAGTACATTTCAGTGTATCCCAACACAAAATGTTCTTTCAAGCTGCAGGAACAGAAGGGGTGCTTTGTGCTTTGAAACTTGAGATCTGTATAGTAAAT

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15116 SLC25A33_36, RIM2; solute carrier family 25, member 33/36

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153141 lncRNA downstream 227781 9848235 ~ 9851376 (-) True G122131
TU153107 lncRNA downstream 303162 9757425 ~ 9775995 (-) False AMCG00002275
TU153025 lncRNA downstream 457685 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 464870 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 791570 9283969 ~ 9287587 (-) True G122037
TU153259 lncRNA upstream 130110 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 186649 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 657308 10750411 ~ 10750781 (-) True G122302
TU153380 lncRNA upstream 719083 10812186 ~ 10813876 (-) True G122319
TU153396 lncRNA upstream 744701 10837804 ~ 10847201 (-) False AMCG00002301
AMCG00002285 mRNA downstream 2491 10066912 ~ 10076666 (-) True AMCG00002285
AMCG00002286 mRNA downstream 48751 10024419 ~ 10030406 (-) True AMCG00002286
AMCG00002280 mRNA downstream 72586 9977776 ~ 10006571 (-) True AMCG00002280
AMCG00002279 mRNA downstream 234831 9836918 ~ 9844326 (-) True AMCG00002279
AMCG00002276 mRNA downstream 246069 9830519 ~ 9833088 (-) False AMCG00002276
AMCG00002282 mRNA upstream 96660 10189763 ~ 10197544 (-) True AMCG00002282
AMCG00002281 mRNA upstream 132185 10225288 ~ 10239533 (-) True AMCG00002281
AMCG00002284 mRNA upstream 146989 10240092 ~ 10244785 (-) True AMCG00002284
AMCG00002288 mRNA upstream 176786 10269889 ~ 10279971 (-) True AMCG00002288
AMCG00002292 mRNA upstream 298623 10391726 ~ 10403880 (-) True AMCG00002292
TU153139 other downstream 226082 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 245933 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 2239746 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5859280 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 6292613 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 1431790 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1574652 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 1638514 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 1755367 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 1778759 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile