RNA id: AMCG00002285


Basic Information

Item Value
RNA id AMCG00002285
length 1074
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00002285
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10066912 ~ 10076666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGTTTTTAACCAAATATTAGCAGAATACCCTCAGCTGACCCTTGCCGGTGGAGTCGGGGCGACAGTGTGCACTGCTGGAGCCGTCATTTACAGAATTGCAACGAGAAAGAAGCCTACTCATGTCAATGTCAATTGCTGGTTCTGTAACCAGGACACAATCGTGCCATATGGGAACAGAAATTGCTGGGACTGCCCAAACTGTGAACAGTACAATGGCTTTCAAGAGAATGGTGACTACAACAAACCCATTCCTGCTCAGTACATGGAACACCTGAATCACGGAGTTTCTGCCGGTCTTCCTGTGCCAGACACATCCAAGACTCTACACTGGGTTAACTGCCAGATGTTACTGTGCAAGAAATGCAACAATAACCAGACTCTGAAGATCAAACAGCTGGCTTCGTTTGCACCAAGAGAAGAGACCGCCGTGGAGTATTACATCAAGTACCAGAACCGTCAGCTCCGGGCTCTGCTCTTCAACCACCAGCTCAGACGCAGTAGGGATGCTGACAAGGCCTTTATACAGAATTCCTACACCTTTTCCACTCCTGCTTGGGTGATATTTTTACGGATCCTGGCCTTCCTTACCTGCTCTTTCCTGGTGGCACTGATGATCTACGGCTCTGGGGGCCCTTTTATTCACGACAGCCCCTCACAGCCTGCTGCCAATGCGTCGGAGTATCCGCCTGGGAACGGCAGCAGCAGCGAGAGCATTCGTGTCTGGCCGGAGCTCCTGAGTCACCTTCCCGAGGAAGCTGTGGAGAATGCGAGGGCTGTGTGGGACTTTGGGAGACACCATCAGATGGCAGTTGTGGCCCTGGGCCTGTTCATGTGCCTCCTGGCTGTGCTCATGGGTGGGCGCCTCAGACTTCGGCGCATTGACGCTGTGGCCTCCATCCTGTGGTTCCTTGTGATGGCTTTGCATCTGGTGGAGAACTACCTGAAAACGGACGTCCCCAGCTGGCTGGACACGGTCAAACTCAGTACCACCTCCCTCTGTTGCGTGGTGGGCTTCACGGCTGCCATGGCCACACGCAAGTCCACCGGCCAGAGAAGAACCAGAGCTCGA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153141 lncRNA downstream 215536 9848235 ~ 9851376 (-) True G122131
TU153107 lncRNA downstream 290917 9757425 ~ 9775995 (-) False AMCG00002275
TU153025 lncRNA downstream 445440 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 452625 9612062 ~ 9614287 (-) False AMCG00002265
TU152989 lncRNA downstream 779325 9283969 ~ 9287587 (-) True G122037
TU153259 lncRNA upstream 146547 10223213 ~ 10224982 (-) True G122226
TU153264 lncRNA upstream 203086 10279752 ~ 10279984 (-) False AMCG00002288
TU153358 lncRNA upstream 673745 10750411 ~ 10750781 (-) True G122302
TU153380 lncRNA upstream 735520 10812186 ~ 10813876 (-) True G122319
TU153396 lncRNA upstream 761138 10837804 ~ 10847201 (-) False AMCG00002301
AMCG00002286 mRNA downstream 36506 10024419 ~ 10030406 (-) True AMCG00002286
AMCG00002280 mRNA downstream 60341 9977776 ~ 10006571 (-) True AMCG00002280
AMCG00002279 mRNA downstream 222586 9836918 ~ 9844326 (-) True AMCG00002279
AMCG00002276 mRNA downstream 233824 9830519 ~ 9833088 (-) False AMCG00002276
AMCG00002277 mRNA downstream 259614 9802308 ~ 9807298 (-) True AMCG00002277
AMCG00002283 mRNA upstream 2491 10079157 ~ 10093103 (-) True AMCG00002283
AMCG00002282 mRNA upstream 113097 10189763 ~ 10197544 (-) True AMCG00002282
AMCG00002281 mRNA upstream 148622 10225288 ~ 10239533 (-) True AMCG00002281
AMCG00002284 mRNA upstream 163426 10240092 ~ 10244785 (-) True AMCG00002284
AMCG00002288 mRNA upstream 193223 10269889 ~ 10279971 (-) True AMCG00002288
TU153139 other downstream 213837 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 233688 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 2227501 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 5847035 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 6280368 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 1448227 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1591089 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 1654951 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 1771804 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 1795196 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044272 True 2714 mRNA 0.48 11 NC_007134.7 29827134 ~ 29858087 (-)
grasscarp (Ctenopharyngodon idella) CI01000001_11957291_11972213.mRNA True 2787 mRNA 0.46 10 CI01000001 11956592 ~ 11972549 (-)