RNA id: AMCG00002288


Basic Information

Item Value
RNA id AMCG00002288
length 1390
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00002288
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10269889 ~ 10279984 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATCATCATGAGGGATCAATCCTAATAAAATTAATTCCTGATGAGGATGAACACAACCAGTTGGTCGACAAAGTAGAGGAGTTTGAGGGATTTTCTGGGCTTATTGCCAAACTGAACCTGGTGCTGGAGCACCTTCCCGTGCAGCACCCTCTCCCGGTCGCCCAGCCAAAGTTCCAGGCCCTGGTCCCGACCCCTGCCACCCGTCCAGAGGTCCCGAacccggccgccgccgccgatCCAGAGGTCCCGAACCCGGCCGCCGCCACCGATCCAGAGGTCTCGATCCCAGCCGCCGCCGCTGATCCAGAGGTCTCGATCCAGATCCAGATCCCGGCCGCCGCCGAACCAGTGGTCCAGTTCCAGATCCTGATCCCGGCTGCCGCTGAACCAGTGGTTTACGGTGGACTTCTGCACATAATGAACAATAACCGCTGCCACCTTGAGATGTGTGTGGACTCTTGGCCCGACTTCAGCACTGTCATTTGTCGACGTCAGAAACGGGTCTTGTCAAGTCATCACAAAATGTTGCCCAATCTATGCACGCTGTTTACAAAGGATGTTGCCAGTATGCGGATGATGCTAATGGACGGAGTAATCGACTGCAAAGGGGATATGATAATCTCTGCTGTCCCAAGCTCGTGCTGTGGTCTGATCCAAGAGATCGCCAGCAGCAATGGCATGGAAGTGGAAAATGTCAACATCTGTATTCAAAACAATCCAAAGTATATAGAGTGTGGGAGGAGTGATTTGGCATCAAAGGTTTCCAGTCTGAATGTCTCCCACGCTGAACTGGTGTGCAGCCGCTTTGCCTATGGTGGGAATGAACTAACTCGGAACCACGTGAGGAGCTGCATCCACAACTTCCCCAGCTGCTGCATCCTAGATGAAGGAGGCAACCCCGTCTCCTGGAGTTTGATGGATGAGCTGTACTCAATCAGAATGGCATTCACTCTGCCTGAGTATCGCAAGCAAGGATACATGAAGACCGTCACTGCTGCACttgtaaacaaagcaaattCACTGGGCTTACCAGTCTATTGCCATGTTCTCAATTCAAACACAGCCTCACTCAATGTAGTGAAATGTGTGGGCTTGACCATTTACCCGGAAGAGTATAATGTTTTTGCCCTATTTGTGAGTCCAGAAAACCAACAAGGCAATTAGAGTAACTACAACACGGGACACCTCTCTCTAAATGCTGGTAATTAAGTTATCCTAGTTACTGAAAAATCTCTCCAGTCTGCTATCCCAATCTGTAGTGACCTACATCTAGCCTTAATCTACTGGTGCAGGTATCCTTATTACACTGTAAATCCTCCctgaatacaatgttttttttctttcctgtgcaACACTTTATCTTCCCCCCCCCAGTGCATTTCCTTTG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153259 lncRNA downstream 44907 10223213 ~ 10224982 (-) True G122226
TU153141 lncRNA downstream 418513 9848235 ~ 9851376 (-) True G122131
TU153107 lncRNA downstream 493894 9757425 ~ 9775995 (-) False AMCG00002275
TU153025 lncRNA downstream 648417 9621028 ~ 9621472 (-) True G122061
TU153015 lncRNA downstream 655602 9612062 ~ 9614287 (-) False AMCG00002265
TU153358 lncRNA upstream 470440 10750411 ~ 10750781 (-) True G122302
TU153380 lncRNA upstream 532215 10812186 ~ 10813876 (-) True G122319
TU153396 lncRNA upstream 557833 10837804 ~ 10847201 (-) False AMCG00002301
TU153446 lncRNA upstream 987593 11267564 ~ 11274527 (-) True G122376
TU153515 lncRNA upstream 1127553 11407524 ~ 11409586 (-) True G122432
AMCG00002284 mRNA downstream 25104 10240092 ~ 10244785 (-) True AMCG00002284
AMCG00002281 mRNA downstream 30356 10225288 ~ 10239533 (-) True AMCG00002281
AMCG00002282 mRNA downstream 72345 10189763 ~ 10197544 (-) True AMCG00002282
AMCG00002283 mRNA downstream 176786 10079157 ~ 10093103 (-) True AMCG00002283
AMCG00002285 mRNA downstream 193223 10066912 ~ 10076666 (-) True AMCG00002285
AMCG00002292 mRNA upstream 111755 10391726 ~ 10403880 (-) True AMCG00002292
AMCG00002302 mRNA upstream 475861 10755832 ~ 10789955 (-) True AMCG00002302
AMCG00002301 mRNA upstream 558944 10838915 ~ 10845984 (-) True AMCG00002301
AMCG00002303 mRNA upstream 646897 10926868 ~ 10929003 (-) True AMCG00002303
AMCG00002313 mRNA upstream 998455 11278426 ~ 11279133 (-) True AMCG00002313
TU153139 other downstream 416814 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 436665 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 2430478 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 6050012 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 6483345 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 1244922 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 1387784 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 1451646 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 1568499 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 1591891 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile