RNA id: AMCG00002289


Basic Information

Item Value
RNA id AMCG00002289
length 2880
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00002289
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10384425 ~ 10392661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtaaatattattgaaaattcTGATGTCCAAAGTGCATTACAAGCCAGCGGtcaattgattttatttattgttttgtagcAGCTAGCCTAATACAATGGAAGGAGTAACTATCCTGCAAAAATCCACTGAAAGGAAAGGGCAGTTGACTCTGGTCCTGGCTTTGGCAACCCTGATTTCTTCATTTGGATCGTCCTTCCAGTACGGGTACAATGTGGCTGTGATCAACTCTCCTGCTCCGTTTATGCAGCAATTTTATAACCAGACGTACTTTGGTCGCTACGAGAGGCCGGTGGATGACAGCCTGCTCACCTTGCTGTGGTCCCTGACCGTCTCCATGTACCCCCTGGGTGGCTTCTTTGGATCCCTGATGGTTGCCCCACTTGTGAACAAACTGGGGAGGAAGGGGACCCTCCTGTTCAATAACATCTTCTCTATAATCCCTGCTATCCTGATGGGAGCGAGCGAGGCTGCCGGCTCCTACGAGATCATCATCGCCTCACGGTTCCTCGTTGGGATATGCGCAGTGCCTATGTACCTGGGAGAGCTCTCTCCAAAGAGCCTGCGTGGGGCGGTGGGCATCATGCCACAACTCTTCATCACCATCGGCATCCTTGTCGCCCAGGTGTTGGGGATCAGGAGCATTCTGGGCAGCACCAGAGGCTGGCCTCTCTTGCTGGCTCTCACTGGAATCCCCGCAGTCTTTGAGCTCATCTTCCTGCCCTTCTTTCCCGAGAGTCCCCGCTACATGCTGATCCAGAAGGGAGATGAGGAGAACGCCAGGAAAGCTCTGCAGCGGCTGCGTGGCTGGGAGGACGTGGGCGAGGAGCTGGCGGAGATGCGTCTGGAGGACCAGTCGGAGCGCGCAGAGGGACGCCTGTCCGTGCTGAGCCTCTGCTCCTTCCCCTCACTGCGCTGGCAGCTGGTCTCTGTGGTCGCCATGAACATGGGCCAGCAGCTGTCCGGCGTCAACGCGATCTACTACTATGCCGACAGCATTTATGGTTCTGCAGGCGTCCAAGAGGGCAACATACAGTTTGTCACCGTTGGAACAGGGTCTGTGAATGTGGTCATGACGGTGATAGCGGTGTTCATCGTGGAGAAGCTGGGGAGGAAGCTCCTGTTGCTCAGTGGCTTTGGGATCTGCTGTGTTGCATGTGCAGTGCTGACTGTCGCCCTCCGTTTTCAGGAAAGTGTGGAGTGGATGCCCTACCTCAGCATCGCCTGTGTCATCATCTATGTCATTGGCCATGCCATTGGACCCAGTTCTATCCCTTATGTGATTACCACGGAGATGTTCCGCCAGGCCTCTCGTCCTGCCGCCTTCGTCATCGCCGGCTCTGTCCACTGGCTGTCCAACTTCACTGTGGGCCTGGTCTTCCCTTTCCTGGAGAAAGGGCTTGGCCCATACAGCTTCATCATCTTCTCCTTAATTTGCCTGGTCACGCTGGTCTACATTTTCATCGTGGTGCCGGAAACCAAGAACAAGACCTTCCTGGAGATCAGCCAGATGTTCGCAAAGAGGAACAAAGCAGAGATCATCATAGAGCCAGGAGACCTCGGCACGGAGAAGGACCCAACTCTAATGAGCAGTAAACTGGACACCAGACCGGAGGGAATGAAGGTGACCAAATTCTAAGGCGACCTTTGCGTGCCCTCCAGAATCCCACAGATGTCCACGTGTTCCCCCCCGCtgactaataataaaaaatataatagtgACAGGAAACATAAAACTATGCAAGGATAAAGTGGCGGGGGGCTTCGGTATTTAGTCAGGATCGTACCCtggatattttcaaatgagcaACAGCTGCTGGTTTTGATGGAATTGTAATCTTTCATCCTCCTTTGAAACGTATGCAAGATACTGTTCTTGTTGATGTTGTTCTCGAATCATAGACAATTTTCCAGGCGTGTCCTGTAGAGGCTCCAACACTTGCTctgattaatttgtatttgtttttattggaatCGCACTTCTGCCACTAGACCAGGGGTTcacaatgtctggtgatggagggacaatttccggaggttgcattGGATGGGGGGGCCGTAGTACCAAATGaaccacagatgaaaacaaaatatttcccaaattatacctttttatttctgttagggaacatttattaactttaattgttgttttattattttcccccaaattacatttgcaatttataacagaaaatgttcatgaagtgtaaaaatatagtaaaggttcagaaaaagGGTGGTTGAAGgctggctttggggggccgcaccaaacatcctcgggggccacactttgggaacccctctACTAGACAGTTAAATATATAGGCAGTTAATAaccatttaataacacattaaatataGTTGTGTCTATTCTACAGTAAGGTCTTACATTACAACATTTCTGAAGATCTTCAAAAAAagtcttacaaaaaaaaaaacagcaaatagtTTCCTGGAAAAACTCTTATCCACAATCTTGTGGCCATTAGCTGTATTAAATTCCCTTAAATAATAGATTGCtgaaatttaattatttattgtagatATACAGATCTGAATTAGATACAAGTTCTATATTGTTGAACACCATACACGTTACAAATTCACTTACTGCTGCTACTGTGCAGGCCCTGTTTGGAACAGATCCCcagctattaaaaataaatggataaaacaaaaagtagcACACGTAGAAAATTCCCaaagcattgtatttttcttattagactgaatataaaatataatagtttTGGTTAACTTCCATTGTGTGTACAGGTTAACGTGCTCTACCCATCACAGACAGTGCTTTAATGagactaaataaaaaagatgaagTAAACCTCTACAAAGTAGTCACTGGACTCACTGTCTGAACAAGTC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08143 SLC2A5, GLUT5; MFS transporter, SP family, solute carrier family 2 (facilitated glucose/fructose transporter), member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153270 lncRNA upstream 57774 10323529 ~ 10326651 (+) True G122236
TU153225 lncRNA upstream 252225 10079747 ~ 10132200 (+) True G122198
TU153135 lncRNA upstream 485545 9862956 ~ 9898880 (+) True G122126
TU153132 lncRNA upstream 535413 9844280 ~ 9849012 (+) False AMCG00002272
TU153125 lncRNA upstream 553747 9829754 ~ 9830678 (+) True G122119
TU153350 lncRNA downstream 360017 10752678 ~ 10753881 (+) False AMCG00002296
TU153390 lncRNA downstream 478112 10870773 ~ 10927943 (+) True G122328
TU153467 lncRNA downstream 942270 11334931 ~ 11348638 (+) True G122389
TU153478 lncRNA downstream 966300 11358961 ~ 11359521 (+) False AMCG00002310
TU153482 lncRNA downstream 972953 11365614 ~ 11367895 (+) False AMCG00002311
AMCG00002290 mRNA upstream 7663 10366149 ~ 10376762 (+) True AMCG00002290
AMCG00002287 mRNA upstream 80064 10301307 ~ 10304361 (+) True AMCG00002287
AMCG00002278 mRNA upstream 412760 9951006 ~ 9971665 (+) True AMCG00002278
AMCG00002273 mRNA upstream 510331 9873347 ~ 9874094 (+) True AMCG00002273
AMCG00002274 mRNA upstream 521336 9853550 ~ 9863089 (+) True AMCG00002274
AMCG00002291 mRNA downstream 7000 10399661 ~ 10425473 (+) True AMCG00002291
AMCG00002293 mRNA downstream 64663 10457324 ~ 10541658 (+) True AMCG00002293
AMCG00002295 mRNA downstream 158006 10550667 ~ 10558464 (+) True AMCG00002295
AMCG00002294 mRNA downstream 195734 10588395 ~ 10604839 (+) True AMCG00002294
AMCG00002297 mRNA downstream 275031 10667692 ~ 10670647 (+) True AMCG00002297
TU153130 other upstream 533119 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 535413 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 1622346 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 2987864 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3781817 6586654 ~ 6602608 (+) False AMCG00002190
TU153306 other downstream 175251 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 984279 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1236351 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 1295939 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1442778 11835439 ~ 11836169 (+) True G122582

Expression Profile