RNA id: AMCG00002294


Basic Information

Item Value
RNA id AMCG00002294
length 5027
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00002294
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10567912 ~ 10604839 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGTGCACTGGGAAGGCAAGGGTGATCTGATcactttctactactactgGAAGAAGACCCCTGAGGCTGCGAGCTCGCGGGCACATCGCAGACACCGCCGCCAGCCCGTCTTCCGCAGGATCAAGACACGCACCGCGTCCACGCCTGTCAACACGCCCTCCCGCCCGCCCTCCAGCGAGTTTTTGGATCTCAGCTCTGCCAGTGAGGATGACTTTGACAGCGAAGACAGTGAACAGGAGCTGAAAGGATACGCCTGCCGTCACTGTTTCACAACCACTTCCAAGGACTGGCACCACGGAGGGAGGGAGAACATCTTGCTGTGCACAGACTGCCGGATCCACTTCAAGAAGTACGGGGAGCTGCCACCCATCGAGAAGCCAGTCGACCCTCCGCCTTTTATGTTCAAACCAGTAAAAGAGGAAGATGACGCTCTCAGCGGCAAACATAGCATGAGGACGAGACGGAACCGGGGCTCGATGTCTACACTGCGCAGTGGTCGTAAGAAGCAGACAGCCAGCCCGGATGGCAGAGCCTCGCCCACCAATGAAGACCTGCGGTCCAGCGGGCGCACCTCCCCTAGCGCTGCCAGCACCTCCAGCACGGACAGCAAGACGGACTCCATGAAGAAGCCCAGCAAGATCAAAGAGGAGGTGCCGTCTCCACTGAAGAGTGCCAAACGACAGCGGGAGAAGGCCGCCTCGGACACGGAGGAGCCCGACCGGTCGACTGCAAAGAAATCGAAAACTCAGCCTCCCTCGGCATCCATCTCCACCCCCCTGCCTCCCTCGGTCAGCGCCTCCTGCCCCGGACCCTCTGGGGTGCCCCCCATCCAGATCAAGGAGGAGCCTCTGGACGAGACCGAAGAGCCAGagagcccccccccaccccagaggAGCCCCTCCCCCGAGCCCACGGTGGTCAACACGCCCAGCCACGCCAGCCAGTCGGCCAGGTTCTACAAACACTTGGACCGGGGCTACAACTCCTGTGCCCGGACAGACTTCTACTTCACTCCCCTGGCTGCTTCCAAGCTGGCCAAAAAGAGAGAGGAGGCCCTGGAGAAGGCCAAGAGGGAGGCGGAGCAGAAGGCCcgagaggagaaggagaaagagcgggagaaggagaaggagagggagagggaacgAGAGCGGGAGAGGGAGGCCGAGCGAGTGGCGAAAGCCTCCAGCTCGTCCCACGAGGGCCGGATGGATCCCCAGATGGCGGGGCCGGCCCACATGCGGCCGTCCTTCGAGCCGCCACCCACCACCATCGCGGCGGTGCCCCCCTACATCGGGCCGGACACACCGGCGCTGCGCACGCTCAGCGAGTACGCCCGGCCGCACGTCATGTCGCCCACCAACCGCAACCACCCCTTCTTCGTGTCGCTCAACCCCGCCGACCCCCTGTTGGCCTATCACATGCCTGGCCTGTACAATGCTGACCCCGGCATGCGCGAGCGGGAGCTGCGTGAGCGGGAGATCCGTGAGCGCGAGATCCGAGAGCGTGAGCTGCGCGAGAGGATGAAGCCCGGGTTCGAAGTCAAGCCGCCCGAGCTGGACAGTCTGCATCCCGCCGCCAACCCCATGGAGCACTTCGCCCGGCACGGGGCCATCACGCTGCCCCCCATGGCCGGACCCCACCCCTTTGCCTCCTTCCATCCCGGCCTCAACCccctggagagggagagactggCGCTGGCCGGGCCCCAGCTGCGGCCGGAGATGAGCTACCCCGACAGGCTGACCGCAGAGCGACTCCACGCGGAGCGCATGGCTTCAGTGGCCAACGACCCCATCGCCCGGCTGCAGATGTTCAATGTCACGCCGCACCACCACCAGCACTCCCACATCCACTCACACCTACACCTGCATCAGCAAGACCCCCTGCACCAAGGGTCTGGTGCCCACCCTCTGGACCCGCTGGCAGCCGGACCCCACCTGGCCCGATTCCCCTACCCACCCGGCACCATCCCCAATCCGCTGCTGGGACAGCCCCCCCACGAGCATGAGATGCTGCGACATCCTGTGTTCGGCACTCCGTACCCCCGAGACCTGCAGGGAGCGCTGCCTCCCCCCATGTCGGCCGCTCACCAACTGCAAGCCATGCATGCCCAGTCTGCGGAGCTGCAGAGGTTGGCCATGGAGCAGCAGTGGCTGCACGGGCATCACCACATGCACGGGGGCCCCCTGCCTGGCCAGGAGGATTATTATAGCCGTCTGAAGAAAGAGAGTGACAAACAGCTGTGATCTCTGGACTGACATGAAGGCAGGCAGATATAAAGGACTTGAGAGGATCTGTAAAGCCAGTCCAGTGTGAGGAAGGAACTCCAGTCATTGTCCTAGGAACAATTtcaattaagaagaaaaatatatatatatatatatattcacagaaTATCttctgaggattttttttttttttcctgtttctggaagtttatttttatttttttttattttgaaagaaatggactttatttcatatattacatttgttgaGTAGAGACTAATTTTTTCCTCAAGACTGGTTGTTACTCCCTGCATGATGTATTCAGAGAACTTTCCTGCAGTTTTTGTAGGTGCTAGATAACGAGTCACTTTGTCACTGTGCTTAacgagaaaagaaaaaaaatgcagttagGCAGTATATCCTAAATCTTTAAGTGCTATCTGAAATTCAATcgttattttaatacattgtaggaagttttcataattttaaagaacGCTCAAATCTGCAGCATggcttttttttgtctgtaaataaaaaaatatatatattattattattattattattaggtgtGGATTCCTAACCAGGGTGTTAGACCTCCAATATTATTGTTCTAAAGCATTATCCCTTTGTTTGAAAGGGGAACATGACGGCATTATTTTAGCAGGAAATTCAGTTTGTGAGGTTGTCAGTATGCATTCAAAGAGTTGCAGGGATAACGGTACATTTATATCCGAGTCAACACAGCtctctgtaatgtatttttttaaatgttttttctttacttttttgtttcctgtcatCCTTGAAGACTTGATAATGCCTTGCAGTCAACAATGCAGACAGCCATCTGTGGGACATGTCACTTaaattacttgtattattttccagaaaacaaaaaacgaaattCCCCGCATATTTTCATGGTGAGAATGCGGTTTCTATccctctctctacacacacacaaacgcacacatctatttaaacattttagcattgtgtgtgtaaattgaaaCAGCTTTTAAATGGTAGTGTTTCTCTGCCGCTGAGCATTGCTACTGTCAAGAACATGAGTGTGCAAGAGGGTGCCTGTGAGAGGGACTGTGTGCCCGTGCGTgaatgtttgtgtctgtgcgACTGCGAGCGCGTGtgtgattgagagagagagaggctgacaAGATTGTCAGCAGAGATTAATTGCACTGAGAGGCCACATGAGCCGTGTGTCGCGTGTTTTTATGAAGTGGTTTATTATACAGTTCTGTGGTTTATACACAGTACTTAGAACACAATTGGGTTCACAACAATTatgaaaaactacaacaaaaactaaataaatgcactttgaaaatgttctgtaatttgatatttttcctTTGATTAAATTCCCAGTACCAAAGTCGTAAAGATGAAATCcatcataaaaacattttgaattaaataaaactgcaggtTTTTCTTGAAGATTTAGGAATAACGAATCCTTTATATGTCACACAAGCTACAGTCTGTTTTGTATGTGGAAAGTTTGGAGGGAGAAGGATAGGggaacataaaatgaaaactccaCATCTCTTCACAGAGCCAATACCATACAGCTAGACTTTATATCGGTCACTTACATTCTCAGTCATAGTGTTTCCTTATGTATTGTATAATTCTTTAGATTAAAGAACCGCAGGCTACCGAAAAGCATTCTGGGTGCAGAAATACATGCTTTTCTTACTGGGCAatataggtatatattttttaaccccTCTTTATCAGTTCACAAGTTATTTTCTCTATCATATCTGTCTAGGTACCTTTTTCACTGTGATTCAAATGCAATTGATAACACTGAGTGCAGGGGGGTTGGGCTGCGGTACTGGCTGCGACGGGCTGAATTTGAACCGAGGGCGCAGACAGGAAGCCGGATGGGTCTTGATGCGTCTGTATTTAGTGACCTGCACGTCTCAGGAGGTGCAGCTGTTACTTGCTCTTGGTTTGTGAATCGAGGGCTGTATATTCGCCATTGTAGACTGTTATATTATATGCGATGTTCACTGTCATATGACTTATGTCAGACCATGTAAAAGAAAATCGTTTGTagttgccttttttatttttatttttccttcttacgttttctttttctttgtttgttgctttgttcTTTCTGTCCTgtccccccttctctcccctcCACATTACTTTCTCtgcatttcattgcatttcatcAGATCTCATTGTTATCCAAAGGAAATGTGATCGGGTACAGATTTGACAGATCTTGAAAGTGGGCTACAGGTGTCAGACTGAACACTAGGTTGTTGAGGCATAGGTGCAAGAGATTCATGcccagttttgtgttttcattgttgcATCCCTCCCCATCCCCTCCATGGGCTATATGGGGAAGCTGTGGGTGAATTTATCTGTATCCTAAATCTTCTCTGGCCATTTCCCAGTCACTTGTGTGTCAGCCACCCTTGATCAGCAgcagttcaatttttttttgtttgtttttgctttagtGTATCAAACCTATGATGTTAAGTGTTGTCAATGGGTTAGCTTCTTGTTTCAGAGCGGCAATAGCAGAATGTAAATTCTGACTGCTAAATTTATATATACCGGTATCTTGAAGcttattgtatatattagtaGTTTGCCATGGGAtaacacaatgtaaacaaaagtaGAATTGAATAAGAAAAATTGTGAGTCCTGTGTTTTCTCCATTTgagtattttgtaatttttttgaaaaacttgtggaattaaaataaactaagttACACCACAGCACA

Function

GO: NA

KEGG:

id description
K05628 RERE; arginine-glutamic acid dipeptide repeats protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153270 lncRNA upstream 261744 10323529 ~ 10326651 (+) True G122236
TU153225 lncRNA upstream 456195 10079747 ~ 10132200 (+) True G122198
TU153135 lncRNA upstream 689515 9862956 ~ 9898880 (+) True G122126
TU153132 lncRNA upstream 739383 9844280 ~ 9849012 (+) False AMCG00002272
TU153125 lncRNA upstream 757717 9829754 ~ 9830678 (+) True G122119
TU153350 lncRNA downstream 147839 10752678 ~ 10753881 (+) False AMCG00002296
TU153390 lncRNA downstream 265934 10870773 ~ 10927943 (+) True G122328
TU153467 lncRNA downstream 730092 11334931 ~ 11348638 (+) True G122389
TU153478 lncRNA downstream 754122 11358961 ~ 11359521 (+) False AMCG00002310
TU153482 lncRNA downstream 760775 11365614 ~ 11367895 (+) False AMCG00002311
AMCG00002295 mRNA upstream 29931 10550667 ~ 10558464 (+) True AMCG00002295
AMCG00002293 mRNA upstream 46737 10457324 ~ 10541658 (+) True AMCG00002293
AMCG00002291 mRNA upstream 162922 10399661 ~ 10425473 (+) True AMCG00002291
AMCG00002289 mRNA upstream 195734 10384425 ~ 10392661 (+) True AMCG00002289
AMCG00002290 mRNA upstream 211633 10366149 ~ 10376762 (+) True AMCG00002290
AMCG00002297 mRNA downstream 62853 10667692 ~ 10670647 (+) True AMCG00002297
AMCG00002298 mRNA downstream 88224 10693063 ~ 10709309 (+) True AMCG00002298
AMCG00002296 mRNA downstream 109960 10714799 ~ 10753893 (+) True AMCG00002296
AMCG00002299 mRNA downstream 185537 10790376 ~ 10813875 (+) True AMCG00002299
AMCG00002300 mRNA downstream 215406 10820245 ~ 10834811 (+) True AMCG00002300
TU153130 other upstream 737089 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 739383 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 1826316 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 3191834 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3985787 6586654 ~ 6602608 (+) False AMCG00002190
TU153483 other downstream 772101 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1024173 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 1083761 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1230600 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 1528947 12133786 ~ 12140465 (+) True G122746

Expression Profile