RNA id: TU153306



Basic Information


Item Value
RNA id TU153306
length 1174
RNA type TUCP
GC content 0.54
exon number 7
gene id AMCG00002294
representative False

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10567912 ~ 10604839 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GAAAGCTTGTGTCTGGGGCTGTTCGAGAAAATTGAACGCCCTGTCTCGAAACGCTGTGATCTTTGGAGGAAGTCACTGATCCATGCCGGGTTTTCCATCTAACCAGAGGCTCTCTTGCAGAAAGATCACATGTAAAGCTTTCCCCTTTGTAGTGAAAGAGCAGAGAGTGACAAGCTATTTCTTGCTTGTAAAAGCTGCCCACCTTCTGAGACTTTGTGGATTGCACCTTGATTTTATTTACCTGTAGCTGGATGGAGAAAATTCTTCCCtcctgcctttctctctctgggTTTTGTTGGATTTACCGGGTTGAAGCTGCAGGACGGGATTACTGAGCACTGGACAAGGCTGTGGAACAAGAAAaaacggTTCATCAAAGGTCTAAGACAATACGGCAAAAACTTCTTCAGGATTCGGAAAGAGCTCCTACCACACAAGGAAACGGGTGATCTGATcactttctactactactgGAAGAAGACCCCTGAGGCTGCGAGCTCGCGGGCACATCGCAGACACCGCCGCCAGCCCGTCTTCCGCAGGATCAAGACACGCACCGCGTCCACGCCTGTCAACACGCCCTCCCGCCCGCCCTCCAGCGAGTTTTTGGATCTCAGCTCTGCCAGTGAGGATGACTTTGACAGCGAAGACAGTGAACAGGAGCTGAAAGGATACGCCTGCCGTCACTGTTTCACAACCACTTCCAAGGACTGGCACCACGGAGGGAGGGAGAACATCTTGCTGTGCACAGACTGCCGGATCCACTTCAAGAAGTACGGGGAGCTGCCACCCATCGAGAAGCCAGTCGACCCTCCGCCTTTTATGTTCAAACCAGTAAAAGAGGAAGATGACGCTCTCAGCGGCAAACATAGCATGAGGACGAGACGGAACCGGGGCTCGATGTCTACACTGCGCAGTGGTCGTAAGAAGCAGACAGCCAGCCCGGATGGCAGAGCCTCGCCCACCAATGAAGACCTGCGGTCCAGCGGGCGCACCTCCCCTAGCGCTGCCAGCACCTCCAGCACGGACAGCAAGACGGACTCCATGAAGAAGCCCAGCAAGATCAAAGAGGAGGTGCCGTCTCCACTGAAGAGTGCCAAACGACAGCGGGAGAAGGCCGCCTCGGACACGGAGGAGCCCGACCGGTCGACTGCAAAGAAATCGAAAACTCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU153270 lncRNA upstream 241261 10323529 ~ 10326651 (+) True G122236
TU153225 lncRNA upstream 435712 10079747 ~ 10132200 (+) True G122198
TU153135 lncRNA upstream 669032 9862956 ~ 9898880 (+) True G122126
TU153132 lncRNA upstream 718900 9844280 ~ 9849012 (+) False AMCG00002272
TU153125 lncRNA upstream 737234 9829754 ~ 9830678 (+) True G122119
TU153350 lncRNA downstream 158374 10752678 ~ 10753881 (+) False AMCG00002296
TU153390 lncRNA downstream 276469 10870773 ~ 10927943 (+) True G122328
TU153467 lncRNA downstream 740627 11334931 ~ 11348638 (+) True G122389
TU153478 lncRNA downstream 764657 11358961 ~ 11359521 (+) False AMCG00002310
TU153482 lncRNA downstream 771310 11365614 ~ 11367895 (+) False AMCG00002311
AMCG00002295 mRNA upstream 9448 10550667 ~ 10558464 (+) True AMCG00002295
AMCG00002293 mRNA upstream 26254 10457324 ~ 10541658 (+) True AMCG00002293
AMCG00002291 mRNA upstream 142439 10399661 ~ 10425473 (+) True AMCG00002291
AMCG00002289 mRNA upstream 175251 10384425 ~ 10392661 (+) True AMCG00002289
AMCG00002290 mRNA upstream 191150 10366149 ~ 10376762 (+) True AMCG00002290
AMCG00002297 mRNA downstream 73388 10667692 ~ 10670647 (+) True AMCG00002297
AMCG00002298 mRNA downstream 98759 10693063 ~ 10709309 (+) True AMCG00002298
AMCG00002296 mRNA downstream 120495 10714799 ~ 10753893 (+) True AMCG00002296
AMCG00002299 mRNA downstream 196072 10790376 ~ 10813875 (+) True AMCG00002299
AMCG00002300 mRNA downstream 225941 10820245 ~ 10834811 (+) True AMCG00002300
TU153130 other upstream 716606 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 718900 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 1805833 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 3171351 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3965304 6586654 ~ 6602608 (+) False AMCG00002190
TU153483 other downstream 782636 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1034708 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 1094296 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1241135 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 1539482 12133786 ~ 12140465 (+) True G122746

Expression Profile