RNA id: AMCG00002295


Basic Information

Item Value
RNA id AMCG00002295
length 399
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00002295
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10550667 ~ 10558464 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACTCAACAGCACACAGGGGGAGATCCGAGTCGGGCCGAGTCACCAGGCCAAACTCCCAGAACTTCAGCCCTTCCCCTCTCCAGATGGACAGAATGTGACTGAGAACGAGGAGCTGGTGTGGATGCCAGGGGTGAACGACTGCGACCTGCTGATGTACCTGAGGGCCGCCAGGAGCATGGCTGCTTTTGCGGGGATGTGCGACGGAGGCTCAACAGAGGACGGGTGCTTGGCTGCTTCCCGTGATGACACTACACTCAACGCATTGAACACTCTACATGAAAGTAACTATGATGCTGGAAAAGCCCTGCAGCGGCTTGTGAAGAAACCTGTGCCCAAGCTGATAGAGAAGTGCTGGTCAGAAGATGAAGTGGTAAGGATCGCTTTTCCACTTAATTAG

Function

GO: NA

KEGG:

id description
K05628 RERE; arginine-glutamic acid dipeptide repeats protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153270 lncRNA upstream 224016 10323529 ~ 10326651 (+) True G122236
TU153225 lncRNA upstream 418467 10079747 ~ 10132200 (+) True G122198
TU153135 lncRNA upstream 651787 9862956 ~ 9898880 (+) True G122126
TU153132 lncRNA upstream 701655 9844280 ~ 9849012 (+) False AMCG00002272
TU153125 lncRNA upstream 719989 9829754 ~ 9830678 (+) True G122119
TU153350 lncRNA downstream 194214 10752678 ~ 10753881 (+) False AMCG00002296
TU153390 lncRNA downstream 312309 10870773 ~ 10927943 (+) True G122328
TU153467 lncRNA downstream 776467 11334931 ~ 11348638 (+) True G122389
TU153478 lncRNA downstream 800497 11358961 ~ 11359521 (+) False AMCG00002310
TU153482 lncRNA downstream 807150 11365614 ~ 11367895 (+) False AMCG00002311
AMCG00002293 mRNA upstream 9009 10457324 ~ 10541658 (+) True AMCG00002293
AMCG00002291 mRNA upstream 125194 10399661 ~ 10425473 (+) True AMCG00002291
AMCG00002289 mRNA upstream 158006 10384425 ~ 10392661 (+) True AMCG00002289
AMCG00002290 mRNA upstream 173905 10366149 ~ 10376762 (+) True AMCG00002290
AMCG00002287 mRNA upstream 246306 10301307 ~ 10304361 (+) True AMCG00002287
AMCG00002294 mRNA downstream 29931 10588395 ~ 10604839 (+) True AMCG00002294
AMCG00002297 mRNA downstream 109228 10667692 ~ 10670647 (+) True AMCG00002297
AMCG00002298 mRNA downstream 134599 10693063 ~ 10709309 (+) True AMCG00002298
AMCG00002296 mRNA downstream 156335 10714799 ~ 10753893 (+) True AMCG00002296
AMCG00002299 mRNA downstream 231912 10790376 ~ 10813875 (+) True AMCG00002299
TU153130 other upstream 699361 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 701655 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 1788588 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 3154106 7393800 ~ 7396561 (+) False AMCG00002215
TU152254 other upstream 3948059 6586654 ~ 6602608 (+) False AMCG00002190
TU153306 other downstream 9448 10567912 ~ 10594304 (+) False AMCG00002294
TU153483 other downstream 818476 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 1070548 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 1130136 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1276975 11835439 ~ 11836169 (+) True G122582

Expression Profile