RNA id: AMCG00002296


Basic Information

Item Value
RNA id AMCG00002296
length 3272
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00002296
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10714799 ~ 10753893 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACGGCGGCTGGCAAAACCACTCCTGGTGAGAACAGCGTGAGGCCCAGTGGccGTGACAGTGACCTCTCGACTATCATCTCCAATCTGCACCACACCAGACAGCTCGTTATGCCAGAGAGTCAGACCTGCAGCGAGATCAAGAGGAATGGCAGTGACATTGGCTCAGCACCAGCAGATGAAATTTTAGGCAAGAGAAGAGCCTATTCGCCCAGCAGTGAGTGCCTTTCTGAAAGCAAGAAGTCCAGAAGTGTCTCTCCCAAAGagAACTCTCAGACCCCTGTGCTGGAGCTGTCGTTGCCGGGGCCGATGACCCCGGAGGAGCACTACAGGCGGATGATGTCAGCACTGAATGAGCACGGGTCCTAcgaggagcagcagcagcgtcTGTACCAGCTGGCCAACAGCATGGGCGTGCCCAGCCATGGAGATATCACCCATCCACCACCCCTGCTGTCACCACAAAACGCCCCACACATCGCCCTGGGACCCCACCTGCGGCCACCCTTTCTAGGCATGCCCTCTGCACTGTGTCAGGCGCCAGGCTATGGCTTCCTGCAGCCGGCTCAGGCGGAGATGTTTGCCAGACAGCAGGAGATGCTGAGGAAACAGAATCTTGCAAGGCTGGAGATGTCTGCAGAACTGCTGCGTCAGAAGGAGCTGGAGAACCTCCATAGGCAGCGCCTCCTGGGAGACCCCCTGGGGCTGCCACCCGGCCTGCCACCCGACCACCCAGCCCTGCGCAGCCTGCATGACATTCCCGAGGGACACCCGCTGCGCGAGGAGCTCACCCGCCGCAACGCCATGTTGGTTTTGCGGCACAACAACACGCCGCTGCTCTCACTCAACCACCAGGGGGTAGCGCCGGGGGCAACGCCGCCCAAGGAGAGCGCGCGGAAGAGCTCCCGGAAGGGGGGCCAGGCCCGCGGAGACCTGCAGTGCCCCCTCGAGGCCAAGGACCACCCGGGCGAGGCACGGGCACGGGAGGGGGGCATGGACGGCGGGCAAGACGAGGAGATGAAGGACTCTGAGAGTGACGCTGAGGTTGGAGAGGACAGAGCCGAGGTCATGCCCAAGTCTGATGGACACCACATGATGAGCTCTGACCCCAGCCAGGGCAAGGATGGTGCCAACACCAAGCCCCTCGAGGGCAGCAAGGATCTGAGTGAGGTGTCTGGCCGTCAGAGCGCCCCCTGTGTCTCCGCCGGTGCAGAGTCCCCAGGCCACCACCCCTTCACCGTGGGTATCAACAAGAGCGATGCCAAATACCTGCCCCCTGGCATTGTGCCCCCACTGCCTCCGCAGCCTCTGCCCTTCGGATTCCCCTACACGGCCAGCCCCTACTTCCACACAGGCACCATGGGAGGTCTGTTCCTGGACGGTGAGGAGGCCGGGCCCATGGAGGACATCAGCAAGTGGACAGTGGACGAGGTCTGCGGCTTCATAGGCAGCTTGTCTGGCTGCACTGAGTACACACAGGTGTTCAGGGAGCAGGCGATCGACGGAGAGACTCTGCCCCTCCTGACAGAAGATCACCTGTTGAACAACATGGGCCTAAAACTGGGCCCAGCCCTGAAGGTCCGCTCACAGGTCGCCAGGCGGATTGGCCGAGTGCTGTACATGACGAGCTTTCCCCTGGCATTCCCGCTGCAGCCATCTGCTCTGCGCCCCCCCGACCGAGATCCCCCCCCTGTGGAGAACCGGCCCCCGTCCTCCGGCAGCGTCTCCTCTCCCTACAGCGCCCCCCCCGCCAGCCGCATCTCACCCAAGCAGGAGAACGGAAACTCATCCTCAGTGGGAATCGGCGACACCACAAAACCACCATCTTAAATACAGAATAAGGAAacgaaaaaacacacacacacacacacacacagcttttaaCTTCtgccagagagagaaacaggataagagaggaggggagagggagtCGCTGCATCCCTCTCGGCTAACCTTGACATCGCTTTGTttggactttttctttttttttttttttttaatgttatgtcACCTTCAAGATTTCTCCAAGGCTGTAGAAGTGTGGAACCCAAAGATCACTGAAATAAGGGGGTGGGCACAGAGACAggaagtgggagagagagagcagacagCTGGTCTTTAACAgcttgccaaaaaaaaaaaaagtaaattctTCTCTGTCATGCAGACAGAAGCTAAAGGAAACATTTCTTTCCTGGGATGAACTGAGCACTTGCTTGTGTGAATTGCTTTCAGGCacttataaaaattaaaacgaAGGGGGGGGTCTTGgatgagatttattttatttttttaactctctctctccccatctgaTTAATTCATCCCATCCCAAGGTAAAACGCCTCTGAGAaggggggggaataaaataaaataaaggacaaaAAGGAACTTGAATTTTTGGCAACTATGCATTCCAAGGATCAATACCAAAGAAGTGAGGATGAGATCCACGCTTACGTCAGACTGGTACGGAAAGCCAGGGTTGTCCAAGGCTGTGTGAACTCTGGGCCGTGTTCTTGCTGAACGGACAGTGGGAGTGGGGTGATCCTATTTCCCAGGACAGAAAAGACAGAAATAGAGACACCACCCCAGTTCCAGGCCAACAGCCTACCAACCTTGGCGCTTGtgggttttttgtgttttttttttttttttttttttactgggcCTATATACAGGACACAAGAAGTGCCTCATCACAGAGGTTATTGATACAGCACAGTTATACTATGGATCACAGCTGTGGATATCTTTTTCCTGACTGATATCTTTGTACGATCACATTTACTACTGTGGGAAGAGACACCAAACCTACTTGTGCAGtgatgtacaaaaacaaaaatattctgaaCGTTACATAAGTGGTACTTTTTGTTATGTATAGTTGCacgtattacatttttttttttttttttgaacaaAATATGACTTGCTTACTTGGGTGGtacgtgtttttattttcttccccccgATGTTTATGTTTGATAAAGTATTTCTATTGTAATAATGAAGCCCCACCTCAAATGCTGCTTtatagcaaataaataaaacaaacaaaaaaatatttataacattttcattgtagGTTGACactatacagtatgtattcatCCCAGAAGTGGATGCCAAAGAtcaaccttaaaaaaaataataataaaacttgtTACGAGGAGATGTGAGGCACAAAGCTCTTTATGCAAAATTTGTTTGGGGAATATTTTGGGAAATGTGTgaatactttaaaattaaaagggtCGGTACATTTGTCA

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153270 lncRNA upstream 388148 10323529 ~ 10326651 (+) True G122236
TU153225 lncRNA upstream 582599 10079747 ~ 10132200 (+) True G122198
TU153135 lncRNA upstream 815919 9862956 ~ 9898880 (+) True G122126
TU153132 lncRNA upstream 865787 9844280 ~ 9849012 (+) False AMCG00002272
TU153125 lncRNA upstream 884121 9829754 ~ 9830678 (+) True G122119
TU153390 lncRNA downstream 116880 10870773 ~ 10927943 (+) True G122328
TU153467 lncRNA downstream 581038 11334931 ~ 11348638 (+) True G122389
TU153478 lncRNA downstream 605068 11358961 ~ 11359521 (+) False AMCG00002310
TU153482 lncRNA downstream 611721 11365614 ~ 11367895 (+) False AMCG00002311
TU153499 lncRNA downstream 703751 11457644 ~ 11470525 (+) True G122417
AMCG00002298 mRNA upstream 5490 10693063 ~ 10709309 (+) True AMCG00002298
AMCG00002297 mRNA upstream 44152 10667692 ~ 10670647 (+) True AMCG00002297
AMCG00002294 mRNA upstream 109960 10588395 ~ 10604839 (+) True AMCG00002294
AMCG00002295 mRNA upstream 156335 10550667 ~ 10558464 (+) True AMCG00002295
AMCG00002293 mRNA upstream 173141 10457324 ~ 10541658 (+) True AMCG00002293
AMCG00002299 mRNA downstream 36483 10790376 ~ 10813875 (+) True AMCG00002299
AMCG00002300 mRNA downstream 66352 10820245 ~ 10834811 (+) True AMCG00002300
AMCG00002304 mRNA downstream 238616 10992509 ~ 10995711 (+) True AMCG00002304
AMCG00002305 mRNA downstream 343598 11097491 ~ 11102004 (+) True AMCG00002305
AMCG00002306 mRNA downstream 373566 11127459 ~ 11140687 (+) True AMCG00002306
TU153306 other upstream 120495 10567912 ~ 10594304 (+) False AMCG00002294
TU153130 other upstream 863493 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 865787 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 1952720 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 3318238 7393800 ~ 7396561 (+) False AMCG00002215
TU153483 other downstream 623047 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 875119 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 934707 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1081546 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 1379893 12133786 ~ 12140465 (+) True G122746

Expression Profile