RNA id: AMCG00002300


Basic Information

Item Value
RNA id AMCG00002300
length 3562
RNA type mRNA
GC content 0.48
exon number 17
gene id AMCG00002300
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10820245 ~ 10834811 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAAAGCACCTCTTGgattacaaatttaaaagaaatacatacatcagGAAGGAAGGACTCCCATACACAAGCGCTTCACAATGGGGAGCAGTTTATCCTGCGTGCCTCACAACAGCTTCAGGTACTCCAGCAAGAGCTACATAAGGAGGAAAAGCAGCCTGCTGTTTCGAAAGAAACATCCACAGGAAGGACAGATGAAGTCCAACAGCATCATCAATATACTGTGTACGGTCACGCCCAGAAAGGAAATGTCCACCAAAGACCTTCAGACCATAGAGAACATAAACTGGGATCAGAAGTTTGCGTACAACCCTTCTGGCGGCTGGAAGAAGAGCAGCACCAGCGTGAAGAACTACGGCAAACTGATCTACAGCTCCAAAGTGCGCTTTCGATTCCTGCACTGCCAGGACATTCATGAATGCTACTTGGACTTGTTCCAGACACAcctacattttctttctaacaACACCACTGGATTGACATATCAGGGAACCCTACCATTGAAGGATCTGAGTGTTTTCAAGCTAGATAACAGTGGCATCGAGCCCAGCGAGTATTCGTTCCAGATTAACGTGCGGCGGGGCAGGAGCCCGAAGGCCAGACTGCTCATGCTGAGGAAGGCGATCGAGCCAAGCTCCAGGAGTGTGAGCTTGAACCCTATCATAGTCTACTGTGCCAGTGAGGGCGACCTGGACATCTGGTTTGGGCACCTGAGCAATCAGGTGGAAATAAATGGGGGAACCGTTACCTCACCTGCACCCAAACCATGCGCAAGAATAAAGAACCCAGCAGAGGAGAGCAAAGGACGAGAGGAGCTGAGGAGCTCTGTGCAGAACGAGCCGATATACGAGTGGGAGGGGTCACAGCGCGAGTCCCTGGGGCCCATGGCCTATGTCACCAAGGTGCGGCTGCAGCACCTGCCATGCCAGGACCAGCACGAGAGGCTGCTTGTCTTGTACCCCTCAACCCTCATCATCCTGTCAGACGAAAACAACCATCTATTCTACAAGGGAAAACTTCCTCTCAACATGATTACTGTCTCCACgaacaacaaacagcaacagtCAAACACTTTCCTGATCGAGGGGAAGCTGATTAATCCCATCGTGGTTTCCTGTTTGAATGAGTTTGAGTTCCATGAGTGGATGCGTCACCTCACTGTGGCCCAAGTCCCAGTGCACGGCCCACTGGCACCCGTCTATGACACCATCTACACGCCGACCAAGAAAGAGGCTCCGGAGCTGCACAGATGGGGCAGCAGGGGCAGCAGGGGCAGCCAGGCACAGTCGGAGCCCCAGCCCCCACGCCTGTCCTACGAGCCTCCCCCGGTCAACCACGCTGAGCAGCTTCTGTCCCCGGGATACACGGAGcccctgtgttTCTCCAGCCGCCCCACCTCCACGCAGTCTCAGCAGAGCGGCCACATGATTGGCAGGAGCAGCAGCATGTCGTCGGGGGCAAAGCCCATCCTGGACACCCGCCCCTCGTCTCTACGCAACTCCTCCGCCAGCCGCAACTCCTACGCCTCCATCCACACGCCGAGGTCACCGTTCTACAACACCCCCTACACCCACCTGCAGCTGGAGTGCCCCGTCCCTCATGCAGACAAACTGCCACTCATCAAGTCCAACAGCTGGAGCACCTCCCACACGTCAGTACAATACCAGCCATCGATCAACCAGAGGCATTCTGACATGTGTGCCCCCAGAAAGCCCCTGTCACCCCTGTATGATGACCCCTACACGCCTGTGTCCCCTTCTGGACAGTGCTGGCAAGGTGGCCAAGAACAGCCTGCCCTGCCCACCTCTTTCAGGCTGTGCACCCCCCCCAAGGgcaggaggaagagggaaaTGCCCACAATGGCACAGGACGCACACAGCAGCCAGTGGGCAGATGTGCAGCGGGCAGAGGCTGTCTCCAAACTTAAGCTGCTGCCTCTGCCTTCTGTAATGCCAGGGCACAGCAGCACACCGAAAACCTACCCGTTACAGGGCAGGCAGATGTCAACAGATTACTTACAAGATGAAAACGCTTACCTGAAACCTGCGGAACCAGATGACCTGGACGTGGATTATGATAATGTTTGGGAATGCGAGTCAGAGCAGAAAATGATTCATCCACTCAGGGTGATTACGCCACACCGGACCTTTATGGATCTGGGAGGGAGAGACGTCAGCGCTAAGTCAACACAGGAGAGATGGTCATAAACTGACAAGCCCGGCTTGGGGGCCTGGCCCGAGCAGAGCTGCGTTTAGTCATCTGTTCAGACTGGGCTCTGGCAAAGCTATGCAAACAGACACTTTCAAAGCTTCTGCTGTTCCGATGCTTTGgatgaaacaaaacaccaaaacatCTTGCGGTTAACAGCCTGAAATATCTACCTACATTTCCTCTTCCATTATTatagttttctgtttctttagcAGTTAATTCTTAGCTTCCCAcactcaattatttaaaaaaccttAGAGGAAAGCTATGtctcctctttttttgtttggctCCTGACTAGTTGCAGCGCTGTGACTCTTACACAGATGGGGAAACATGATTCAGTTTTTTCCAACTTTTAAGGATGTTCATGACAAAAGGGGGGGTGCAGGGGAGCCTCGGGAGTAAAAAACATCCTGTTGTTCTTGAAATGACCAACTTGAAACAGTTTTCAGGTGCTGAAGGAAATGGAACTTAAGTGCTTTCATGTGCACAAGAAAATAGGATATTTTTTCCCATTGGGGGGACTGTGGGCGAAATCCATATCTGTGGAGTGTGCAACTGGCCTGCAGTATGATAACTGGGAATACAAAGATCAATTGGCATACTGTACGAGTGCATGTGGAGTATGAGGGAAGTGTTCAGTGCCAAAGGGGTATACAGCAAAGAAGATCAGGGTGGCAAAGAACAATGGGCACTGACAATATAAAGAATACctattatacttaaaaaaaaaatgaatgttatacattttcttcttcactGCTTTCATTTTACAGTTACAGCCATGTTTACATGTGGACgttacaaaaaaatcaaaaaatgtacACCGAACTGCAAAAACAAGCATTGTTTTCTATCGGCTAAGTTgcttttcactttaaaatgtagcatttcaTAATTTGTAGCATTGTGTAAAtaggttttattgtattaaaataagtttacGTTTGATCtatattatttactttatcACTAAATGGGCTCAGGCAGATACAGTAGTGTTGTATAATTGACTAATAGTTCAAAAGCAGCAGCAATACAGGAggctacattattttaacaaagaaaTGCTGCCCAGGTACACACAGATAGGCATTTAGTGAGATATGCAAATGTCTTATTCTACTTTATTTGTAAATAGTGAAGGTTTTCAGCTGACTTCAGTCTGTGCCCTCTGCTTGGtaccataaatataaaatgcattgctttgtaATGCAAGACGATCTGAAAACATGAAGAtcttttaattacattcatattttatttatttcgttCTTAACTTGGTTAGTTTTGTtagattttgttgtttgttttggatatttattataattttgaaaataaaaatggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153350 lncRNA upstream 66364 10752678 ~ 10753881 (+) False AMCG00002296
TU153270 lncRNA upstream 493594 10323529 ~ 10326651 (+) True G122236
TU153225 lncRNA upstream 688045 10079747 ~ 10132200 (+) True G122198
TU153135 lncRNA upstream 921365 9862956 ~ 9898880 (+) True G122126
TU153132 lncRNA upstream 971233 9844280 ~ 9849012 (+) False AMCG00002272
TU153390 lncRNA downstream 35962 10870773 ~ 10927943 (+) True G122328
TU153467 lncRNA downstream 500120 11334931 ~ 11348638 (+) True G122389
TU153478 lncRNA downstream 524150 11358961 ~ 11359521 (+) False AMCG00002310
TU153482 lncRNA downstream 530803 11365614 ~ 11367895 (+) False AMCG00002311
TU153499 lncRNA downstream 622833 11457644 ~ 11470525 (+) True G122417
AMCG00002299 mRNA upstream 6370 10790376 ~ 10813875 (+) True AMCG00002299
AMCG00002296 mRNA upstream 66352 10714799 ~ 10753893 (+) True AMCG00002296
AMCG00002298 mRNA upstream 110936 10693063 ~ 10709309 (+) True AMCG00002298
AMCG00002297 mRNA upstream 149598 10667692 ~ 10670647 (+) True AMCG00002297
AMCG00002294 mRNA upstream 215406 10588395 ~ 10604839 (+) True AMCG00002294
AMCG00002304 mRNA downstream 157698 10992509 ~ 10995711 (+) True AMCG00002304
AMCG00002305 mRNA downstream 262680 11097491 ~ 11102004 (+) True AMCG00002305
AMCG00002306 mRNA downstream 292648 11127459 ~ 11140687 (+) True AMCG00002306
AMCG00002308 mRNA downstream 309198 11144009 ~ 11202001 (+) True AMCG00002308
AMCG00002309 mRNA downstream 379273 11214084 ~ 11244980 (+) True AMCG00002309
TU153306 other upstream 225941 10567912 ~ 10594304 (+) False AMCG00002294
TU153130 other upstream 968939 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 971233 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 2058166 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 3423684 7393800 ~ 7396561 (+) False AMCG00002215
TU153483 other downstream 542129 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 794201 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 853789 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 1000628 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 1298975 12133786 ~ 12140465 (+) True G122746

Expression Profile