RNA id: TU153396


Basic Information

Item Value
RNA id TU153396
length 1837
lncRNA type sense_over
GC content 0.39
exon number 4
gene id AMCG00002301
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 10837804 ~ 10847201 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCGTGTGACCAGAAACTCTGCTCTATTTATAACAAAGTCAATGGGACGGCTTCACTTTATTGGGCCGAAGGACAGGCTGTGGAGGACACAGCTTGCCGTGTGTCTCCAATGCTGCAGGGCTGCGGATCAGGGAAAAGAGAGTTTTCTGCTGTCGGTGAACCAGTCTGATATGTGTTTAGTCTGCATTGCTTTTGCATCCTGGGTGCTGAAGTCATCTAATCCACAAGCTGCAGATGCCTGGAAAGCAGCTTTATTGGCAAACGTCAGCGCTATCTCAGCCATACGATACCTGAGAAGGTATGTCAAGAAGGGCAAGCCAGCAGATGTGCCGTGAAATGAACCTCTGCAAACCATCCCACCGGCAAGAACAGCTACCAGGATGTGCCAGCTGGCTCTCTGGGACTAGGCCTTAGTTTTAACCCAGAAGAAAAAATGATGCATACTGTGTTtggaaggaaatatttaaatcgATGTAAATAATATTAGATGAGAGTGAAATCCCATTGTTCCGGTGTTGTaatttaaagtatctgtgaTAATAGAAGCCATGGATAACACAGTGTTGCTGGATGTTTGTAGACTTCTAGTTCCTGTACATAAAATATGATCTTGCCATCACagagtaaaacaacaacaacatgaaaaaacagAGGTAAATAAATCTGGAATACCATGTGTATAACAGCAGTGTATACATGAACTGAGCTTTGAATATCCCAACAAATCTAATGTATAAAaattgtaaaacacacacacaaatatatatatatatatatatacatatttttttcttatacagGGAATGGTATGTGTTCACAGAATAAGTAGGTGTGTCTTGATTGTAAAGTGTGTGGCAAGGGAGTGAGACCCAGGCTAGGCCGGGGATCCAGGTGTGCAGCCCAGCTTTCTTCAAACCCAGTTCCTTGAGGGCCTGGGGTGTCTTcgggttttcattccacctgtgATCTTACGTTCGTAATCGAACCAAATTATTCACTTAAGGGCACCTGTATGTATCCCCTATCCCAGGTGTATGGCAGGCGACCATATAAAGAAACCTGTCTATATAACCTGCTGGACTGTGGCCCTGGAGGACTGGAATCATAGAATTCTGGTGTGTGTATGGATTTATCTGAaggtttcttttaaaaataaaataaagaaagaaagaatctTGAGGGAAGGGGTTTGAAGTCTTGAGCTGAACTGAAGTCATGGAAGTGGAGGTGAGGGAATTTTAGTGTCTTCTCAGCCCCTGGTCCCAGAGGACTGCTGTGTAATTtgggtttttgttccagctgactTATTGAAAAAGGTCCAATTAAGCAATGATGGTTTAATTTAGGgttcaatttaataattaagagTCCTGCTGGAACAAGAACCCACCCCTTCACCTCTATGCATCACTTCAGGGTAAGAcactctgctgtttttattaaatgggTCCAATTGATTTTTCAAACAAGGTGTCAAAATTAGGTAAACTTACCGTAATTAATTAGATATGAAATAAGTGGCTGAGATCTATGCTATGGTACattgtagatttattttcacccatttattgtgttaaaatgctaagtatatatataaactgaacatgaaggaagaaagaaagaaagaaagaaagagaaaagcgtgtgaaaatatctaaaatattttaaaaaactgcaGCAGCTTTAGTGTATCAGTGAGTGACTCATAGATGCTTTTTtatctcaattaattaatctatttttctttgtatatgAGTGTCTAGAAATGTGATGGatgttgtgttgattttgtgaaatgtaatgtgttacAGTGtccaataaaacagacaaaccata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153380 lncRNA downstream 23928 10812186 ~ 10813876 (-) True G122319
TU153358 lncRNA downstream 87023 10750411 ~ 10750781 (-) True G122302
TU153264 lncRNA downstream 557820 10279752 ~ 10279984 (-) False AMCG00002288
TU153259 lncRNA downstream 612822 10223213 ~ 10224982 (-) True G122226
TU153141 lncRNA downstream 986428 9848235 ~ 9851376 (-) True G122131
TU153446 lncRNA upstream 420363 11267564 ~ 11274527 (-) True G122376
TU153515 lncRNA upstream 560323 11407524 ~ 11409586 (-) True G122432
TU153524 lncRNA upstream 602365 11449566 ~ 11449791 (-) True G122438
TU153646 lncRNA upstream 754771 11601972 ~ 11628435 (-) True G122530
TU153665 lncRNA upstream 867208 11714409 ~ 11716145 (-) True G122548
AMCG00002302 mRNA downstream 47849 10755832 ~ 10789955 (-) True AMCG00002302
AMCG00002292 mRNA downstream 433924 10391726 ~ 10403880 (-) True AMCG00002292
AMCG00002288 mRNA downstream 557833 10269889 ~ 10279971 (-) True AMCG00002288
AMCG00002284 mRNA downstream 593019 10240092 ~ 10244785 (-) True AMCG00002284
AMCG00002281 mRNA downstream 598271 10225288 ~ 10239533 (-) True AMCG00002281
AMCG00002303 mRNA upstream 79667 10926868 ~ 10929003 (-) True AMCG00002303
AMCG00002313 mRNA upstream 431225 11278426 ~ 11279133 (-) True AMCG00002313
AMCG00002312 mRNA upstream 445893 11293094 ~ 11304845 (-) True AMCG00002312
AMCG00002315 mRNA upstream 611862 11459063 ~ 11467699 (-) True AMCG00002315
AMCG00002319 mRNA upstream 637558 11484759 ~ 11505246 (-) True AMCG00002319
TU153139 other downstream 984729 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1004580 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 2998393 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 6617927 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 7051260 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 677692 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 820554 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 884416 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 1001269 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 1024661 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile