RNA id: AMCG00002306



Basic Information


Item Value
RNA id AMCG00002306
length 1215
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00002306
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11127459 ~ 11140687 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGTGTGGCTTCGGGGCGGTGTGTGAGAGGGACCCGGCGGACTCCTCTAAGGCGGAGTGCGTGTGCAGGAAGATCACCTGCCCGGCGGTGGTGGCGCCGGTGTGTGGCTCCGACTCCTCCACCTATTCCAACGAGTGCGAGCTGGAGAAGGCCCAGTGCAGCATGCAGAGGCGTCTCAAGGTGATGCGCAAGGGCCCCTGTGtgccttACATTGGAGTGCTAGTCTTCCAGCTCAATGTCCAGGAAGACAATGCAGCTGTCTCACCCCCCCCGACCGCCCCCGCCATCGGCCTGGTCTCAGACTGCACTGCCAGTGGCCGCAGCTTTGACACGAAGAGAGAGGGACCCTTGAAGGACCCCTGCAGTGAGGTGGACTGCAGCTACGGCAGCACCTGCATCCAGTCGTCCGATGGCCAGTCTGCCAAGTGCATGTGCCCCCTGTCCTGCGAGCAGCAGCCCGAGCACCTGGTGTGCGGCAGCGACGGCAAGGACTACGACAACGAGTGCGTGCTGAACAAACACGCCTGCGACCTGCAGAGGAACATCAGGAAGCAGCACGATGGCTCCTGCGACCCCTGCAAAGACAGCCAGAACAACCTGAACGTGGGGTGTCGGGTGGAGCCGCGCACTCGCCGCCCGCAGACCTTCTCCCCGCCTGAGTCCTGCCCCCCGGGGGGCCAGCCACTGTGCGCCAATGACGGCCTTTCCTACGACAACGAGTGTAAGATGCTCAAGTCCGCCCTGCAGAAGGGCACCGAGCTGCGCAAGATCCATGATGGCCGCTGCAAGAAGAACGAGGAGTGCAAAGACGAGTGCAAGTTCAATGCCATCTGTCACCTGGACAGACAAGGCCCGCGCTGTTCCTGTGAGCCCATCCAGTGCGACGGTACCTACAAGCCCCTCTGCGGCAAAGACGGGAAGACGTACGGCAACGACTGTGAGCGGCGCAAGGCGGAGTGCATAGCCAAAGCTCACATCCCCATCAAACAGCAGGGGCCGTGTGATGAGCAGATGCTGGAGAGCCAGCCGCCCATTTGCAGCATGGGGAGGTTTGGAGACAGATGGTTTGATGGGGAAGCTAAGGCCCAAGGACTCATCTCGTGGGGATTGCTCTCTACCTGGCTCCAGGGAGATGAACCAGGGAAGCAGCCAAGTGAAGGACAACTGCGTGTCTCGGGCATCTCGGCAAGATCACGATGGATGACAAATTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU153390 lncRNA upstream 199516 10870773 ~ 10927943 (+) True G122328
TU153350 lncRNA upstream 373578 10752678 ~ 10753881 (+) False AMCG00002296
TU153270 lncRNA upstream 800808 10323529 ~ 10326651 (+) True G122236
TU153225 lncRNA upstream 995259 10079747 ~ 10132200 (+) True G122198
TU153135 lncRNA upstream 1228579 9862956 ~ 9898880 (+) True G122126
TU153467 lncRNA downstream 194244 11334931 ~ 11348638 (+) True G122389
TU153478 lncRNA downstream 218274 11358961 ~ 11359521 (+) False AMCG00002310
TU153482 lncRNA downstream 224927 11365614 ~ 11367895 (+) False AMCG00002311
TU153499 lncRNA downstream 316957 11457644 ~ 11470525 (+) True G122417
TU153564 lncRNA downstream 381487 11522174 ~ 11522631 (+) True G122467
AMCG00002305 mRNA upstream 25455 11097491 ~ 11102004 (+) True AMCG00002305
AMCG00002304 mRNA upstream 131748 10992509 ~ 10995711 (+) True AMCG00002304
AMCG00002300 mRNA upstream 292648 10820245 ~ 10834811 (+) True AMCG00002300
AMCG00002299 mRNA upstream 313584 10790376 ~ 10813875 (+) True AMCG00002299
AMCG00002296 mRNA upstream 373566 10714799 ~ 10753893 (+) True AMCG00002296
AMCG00002308 mRNA downstream 3322 11144009 ~ 11202001 (+) True AMCG00002308
AMCG00002309 mRNA downstream 73397 11214084 ~ 11244980 (+) True AMCG00002309
AMCG00002307 mRNA downstream 115045 11255732 ~ 11271329 (+) True AMCG00002307
AMCG00002310 mRNA downstream 216865 11357552 ~ 11359840 (+) True AMCG00002310
AMCG00002311 mRNA downstream 226879 11367566 ~ 11379568 (+) True AMCG00002311
TU153306 other upstream 533155 10567912 ~ 10594304 (+) False AMCG00002294
TU153130 other upstream 1276153 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 1278447 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 2365380 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 3730898 7393800 ~ 7396561 (+) False AMCG00002215
TU153483 other downstream 236253 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 488325 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 547913 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 694752 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 993099 12133786 ~ 12140465 (+) True G122746

Expression Profile