RNA id: AMCG00002308


Basic Information

Item Value
RNA id AMCG00002308
length 5186
RNA type mRNA
GC content 0.61
exon number 32
gene id AMCG00002308
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11144009 ~ 11202001 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCCCAGAGCAGGGAACTGACCTCCCACAAGGCATCAGGGGAAACTCCACATGGCGTCCCAGCGGGGGCCGTGAGGGAGATGCAGTGTGGACAGGAGCTGGCACCAGGCTTTGCAATCCTCACTGTGGGCTCTGAGTCCCTGTCTGTGCCTGTCCTCCGTGTCCTTCCTCTTCCTGGTGCCTTCATTCTTCCCTGCTTTCCCAGAATGACCAGCTTTATCCTTGGTGGAAAAGGCAGTAAAGGTGATAGGATGACGGCAGACTCTTTGCAAGGTTTGGCAGGAAAGGACAGCCAACCCGTGGTGTGTGGGCCGAAGCTCCAGCCTACAGTACAGTTGGCAGTGATTGGCACCTCGTCCTTCGATTCGACTCCAAAGCAGAGCGTGCAAGCGGGCGCGAGTAAGAGTCTGCAGCAGATGAACTGTCTCTCTGCACCTCAGAACAAAGAGGCCAGGTCACTTAATTCATCCAACAGTGGCACTACGATGCTAAACGACCTCAGTGTCCCCAGCCCCTGCCAGAAGAAGACCTGTGAGTTCGGCGCGGTGTGCGTGGTACGGAACCTGGAGCCGGTGTGCGAGTGCCCAGACGCCTGCCCCCAGCTGCAGGACCTGGTGTGCGGAAACAACGACCACACCTACGGCAGCCAGTGCGAGATGAAGGCCATGGGCTGCGTCTTACAGCGTGAGATCAAGATCAAGCACAAGGGGCCCTGCAGTGAGTACCAGAGTCCCACCGCCGACCCCGCATCCTCTTGCCAGTTTGGCGCCATCTGCGACACCGAGACTGGCAGATGCGTGTGCCCGACGGAGTGCGTGGACTCCCACCAGCCGGTGTGCGGCTCGGACGGTACCACCTACAGCAACGAGTGTGAGCTGAACGTGCGGGCCTgcacccagcagcaggacctcAAGGTGGCGTCCCAGGGAGAGTGCAAGACTTGTGGGAATATGATTTGCACCTGGGGGTCCAAATGTGTGAAGGGCCAGTGTGAGTGCCCGCTGTGCCGGGCCGAGCCCTACACGCCTGTGTGCGGCACTGACAGCGTCACCTATGACAATGCCTGCGAGATGAAGACGGCCTCCTGCCTCCGCAAGAAAAAGATTGAAATTGCCAAGACCGGAAGCTGCGAAGAAGAGTGTGGCTCAGGGGGCTCGGGCTCGGGGGAGGATAGCACGTGTGAGCAGGAGCGCTGCAAGAAGTTTGGAGGCTCCTGGGACGAGGACACCGAGGACGACCGCTGCATTTGCGATTTCACGTGTGAGAGTGTGCCGCGCAGCCAGGTCTGCGGGTCAGACGGCCTGACGTACAGCAACGAGTGTGAACTGAAGAAGGCGCGCTGCGAGAGACAGCAGCACGTCCACATCCAGAGCCAGGGCACCTGCGAGGcCGTTGCCGTTTCCAGCCCCCCCACAGCGGTGACCCAGCACTGCAGCCAAACGGTTTATGGCTGTTGCCTTGACAACTCCACCACTGCCCTTGGAGTGGGCCTGGCAGGCTGCCCCAGTACCTGTCTGTGTAACTCCTATGGCTCCTACGGCGGCTCCTGTGACCCCACCAGCGGCCAGTGCTCCTGCAAGCCCGGGGTCGGAGGTCAGAAGTGCGACCGCTGCGAGCCCGGCTTCTGGAACTTCCGCGGCATCGTCACGGAGAAGAAGAGCGGCTGCACACCCTGTAACTGCGACGCGGCGGGCTCCGTGCGAGACGACTGCGAGCAGATGACCGGTCTGTGTTCCTGCAAGACAGGCGTGACCGGCATGAAGTGCAACCTGTGTGCCGACGGCAGCCAGATGGGCCTGAGCGGCTGTGACAATGGTCCAGCTCCCCAGACCTCCTGTGCAGCTGTCAAGTGCAAGTTCGGGGCCTCCTGCGTCGTGGTGAACGGCCTGGCGTCATGCGAGTGCCCCCCTCCTGATTGTGACGAGAAGAACAGGACCAAGGTGTGTGGGTCTGATGGAGTGACCTATGCTGACCAGTGCCAGTTGAAGACCATTGCCTGCCGACAGAATAAGGCTATTGCTGTGAGAAACATGGGGCAGTGCTCAGGTGAGATCagcacttttttcctttttcctccgGTCTTTTCCATCGCACAGGGTGTCCCAAACCCCACCCCAACCTCCCTCTTCAGCCCCTCCACCACCCACAGCAAAGCCACCACGCCGCGCCGGAGCAAGCCCATCACTCCGGTGGAGGAGACGCAGCCTATCTTCGTAGAAGCCCTACCgcccccacccaccccaaaGACCGAGGGGAGGCACCCTCCGACCACCCAGCGCCCCAGCACCACCTACAGGTCCCCCCACACGGCCAGGGTCCCTCACACCCCTGCCCGGCCCACATCCCCCATCCCCAGCACGGCCCCCGCTCCCACCCCGtcctcctcttcatcctcctcctcttcacctCTCCCCTTCGAGGACTCGGGCAGTGGGGAGCCCAGTGGAGATGATGATTCTGAGGGTAGCGCCTCGCCAGAAGCTAGCGGGGACGAATCTCCGGAGCTCACCACCACTGCTCCGCCTCCTCCGGCCCCTGAGGACAGGTCTTCCTGTGACAACTCGGCCTTCGGGTGCTGTCCAGATGGCAGGACAGCGGCCAGTGACTCCGATGGCTCCAACTGTCCACCAACCATGAAGTTCAGCGGCTTCCTGCACCTGGAAGAGGTCGAAGGTCAGGAGGTGTTCTACACACCGGAGATGGAGGACCCCAAGTCGGAGCTGTTTGGCGAAACAGCGAGGAGCATCGAGAGTGCGTTGAACGACTTGTTCAGGCGGTCTGACGTACAGAAAGATTTCAAGAGTGTCCAAGTGAGAAGACTGGCTCCCAGCAACTCTATCCTGGCCTTCGTGGAGGCGCATTTCGACCCTGACACCAGATACACAGTGGAGGATGTGGAAAATGCCCTTCTCAAACAGCTGAGGGTTTCCAAGAAGAAGGCGATATCGGTCAAGAAGCCAGAATTGGATAACATCAGATTCAATAACTTTGGTCTGTCCACGCTTCCCTACTTCAcgaccaccaccaccaccaccacggcAGCAGTCACTGTGCcgaccaccaccaccaccctcccGCCCACGGTCTCGTTGACGACAAGACGGCCGGGAACCACACCCAGATCCACCACCCGACGGCCCTACAGCCGGAAGACCACCGCGGCTGCCCCCGTGGCCACGCCCCGCCCgcccaccaccacctcctccacccTGCCTCCAACCTCCACCACCACCGCCAGAGCTAGaccacccccccatcccaaaAAACTGCATAAGCCCTGTGACTCCCACCCCTGCATCCACGGGGGGACCTGCGAGGACGATGGCAAGGACTTCACCTGCATCTGCCCCGCTGGGAGAGGGGGCGCCGTTTGTGAAAAAGTCATCAAATACTACATCCCTGCCTTTGGGGGCAAGTCCTACCTGGCCTTCACCACCATGAAGGCCTACCACACTGTGAGAATCGCCATGGAGTTCAGGGCATCCGAGCTCAACGGTGTGCTGCTCTTCAACGGGCAGAACGGCAAGAAGGACTTCATCTCGCTGACTTTGGTGTCGGGCTACGTGGAGCTGCGGTTCAACACCGGTTCCGGCACCGGCACCCTGACCAGTAAGGTGCGGATCGAGCCCGGTAAATGGCACCAGCTGATCGTGACCCGAAACCGGCGCACCGGGATgctgagcgtggacggggaatCGCACGTGAACGGGGAGAGCCCCCCCGGCACCGATGGGCTGAACCTCGACACCGACCTGTTCATCGGCGGCGTGCCCGACGAGCTCCAGCAGGACGTGAAGGAGAGGACATCCATCTCTACCGGGCTGCTGGGTTGCATCCGCATGCTGGACGTCAACAACATGGTGTACAACCTGCAGGAGAAGGGCGGGAACGTGCTATACGGCACGGGCGTGGGCGAGTGCGGCAACAACCCCTGCCAGCCCAACCCCTGCAGGAACGGGGCGCTGTGCCAGGTCAAAGAGGCCGAAATGTTCCACTGCAAGTGCATCAATGGGTTCTCAGGGCCAACCTGTGCTGATGCGCATAACCCCTGTGAGCCCAACCACTGCCACCCCACCGCCCAGTGCCAGGTGCTGCCTGAGGGCGGCTACAAGTGCGACTGTCCAATGGGACGCGAGGGAACTCACTGTGAGAGAGAGTCCCGAAGTGGTGCCAGCGAGGCCTATATCCCCTTCTTCGGGGGGGATTCCTTCCTGGAGCTCCGGGGGCTGCAGAGTTATGGACATGACTTGCAGCAGACGGTCAGCATGACGGTGGTGTTCCTGGCCGAGGACTCGAACGGCATGCTCTTCTACAACGGGCAGAAGACCGACGGCAAGGGTGACTTCATCTCTCTGGCTCTGATCGACGGCTTCCTGGAGTTCCGCTACGACCTGGGCAAGGGGCCGGCCGTAATCAGGAGCAAGGAAAGGATTAAGAAGAATGTGTGGAACACAGTGAAACTGGAGCGCATGAATCGCAAGGGAGAGATAAATGTCAACGACAAGGACCAAGTGAGAGGAGAGTCACCGAACCAGCACACCTCCCTGAACCTGAAGGAGTCTCTGTTCGTTGGAGGGGCACCAGATTTCAGCCAACTGGCCAGAGCTGCGTCTTTGAAGGACGGCTTTAAGGGAGCAATTCAGAAGATCACACTGATGGGAACCCCGATCCTCAAGCGCGCCAACGCCGTGCGCTCCATTGACGTCTCCATGTACCCCAAGCACCGCTGCTTCTCCAACGCCTGCCAGAACGGAGGCCTCGAGAAAGCCCTGCTGGTGAACAAGTTCGAGCTTAGCATCAAGACGGAGGCCACACACGGCCTGATCCTCTGGAGCGGCAAGGGTGTGGAGCGCTCGGACTACATCGCTCTGGCCGTGGTGGACGGCCGTgtccagatgacctatgaccttggCTCTAAGCCCGTCGTCCTCCAGTCCAGCGTCCGGGTCAACACCAACCGCTGGATCAGGATCAAAGCCAGCAGggctCTGAGAGACGGGTCTCTGCAGGTGGGTAACGAGGCTCCGGTCACGGGCTCGTCACCCCTGGCAGCCACACAGCTGGACACTGACGGCGCACTCACCGGCTTTGTGGGCTGCGTGCGGGACGTGAGTGTGGACAGTGTGGAGCTGCATCTGGTGGAGGATGCCTTAAACAACCCCAAAATACTACACTGCTCGGCCAAA

Function

GO: NA

KEGG:

id description
K06254 AGRN; agrin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153390 lncRNA upstream 216066 10870773 ~ 10927943 (+) True G122328
TU153350 lncRNA upstream 390128 10752678 ~ 10753881 (+) False AMCG00002296
TU153270 lncRNA upstream 817358 10323529 ~ 10326651 (+) True G122236
TU153225 lncRNA upstream 1011809 10079747 ~ 10132200 (+) True G122198
TU153135 lncRNA upstream 1245129 9862956 ~ 9898880 (+) True G122126
TU153467 lncRNA downstream 132930 11334931 ~ 11348638 (+) True G122389
TU153478 lncRNA downstream 156960 11358961 ~ 11359521 (+) False AMCG00002310
TU153482 lncRNA downstream 163613 11365614 ~ 11367895 (+) False AMCG00002311
TU153499 lncRNA downstream 255643 11457644 ~ 11470525 (+) True G122417
TU153564 lncRNA downstream 320173 11522174 ~ 11522631 (+) True G122467
AMCG00002306 mRNA upstream 3322 11127459 ~ 11140687 (+) True AMCG00002306
AMCG00002305 mRNA upstream 42005 11097491 ~ 11102004 (+) True AMCG00002305
AMCG00002304 mRNA upstream 148298 10992509 ~ 10995711 (+) True AMCG00002304
AMCG00002300 mRNA upstream 309198 10820245 ~ 10834811 (+) True AMCG00002300
AMCG00002299 mRNA upstream 330134 10790376 ~ 10813875 (+) True AMCG00002299
AMCG00002309 mRNA downstream 12083 11214084 ~ 11244980 (+) True AMCG00002309
AMCG00002307 mRNA downstream 53731 11255732 ~ 11271329 (+) True AMCG00002307
AMCG00002310 mRNA downstream 155551 11357552 ~ 11359840 (+) True AMCG00002310
AMCG00002311 mRNA downstream 165565 11367566 ~ 11379568 (+) True AMCG00002311
AMCG00002314 mRNA downstream 190954 11392955 ~ 11406464 (+) True AMCG00002314
TU153306 other upstream 549705 10567912 ~ 10594304 (+) False AMCG00002294
TU153130 other upstream 1292703 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 1294997 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 2381930 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 3747448 7393800 ~ 7396561 (+) False AMCG00002215
TU153483 other downstream 174939 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 427011 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 486599 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 633438 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 931785 12133786 ~ 12140465 (+) True G122746

Expression Profile