RNA id: AMCG00002309



Basic Information


Item Value
RNA id AMCG00002309
length 588
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00002309
representative True

Chromosome Information


Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11214084 ~ 11244980 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCATCCTCCTGTGAGCCCAGCACTGGGTACATGCTGGCGGGGCTGCCATTGTTCCCAGTTATATTTGAGGGAGCCGTCGAGCTCCCAGTCGGACACTCCGCCGCGTCCCGGTCTGATCTGGGAGTGACATTGACTTTCAACCGGTCTGTCGTCAAACTGGCGGGGGTTGTCGATGCTCGTCTAGACCCTTCACTGGTGCAAGAGCCGCACAGGACATTAAACGTTGTCAGCACGCCTGGCCTGCGCTCAGCCACGGTCTCGGTCACCTGCACATCTGTGAGTGTCATGTGGTTTCACCCCAACATCACTGGGATAGAAGCAGAACAGCTACTCCTGACCAGGGGGGTGCATGGCAGTTTTCTTGCCCGGCCAAGCAAGAGCAACCCAGGAGACTTCACGCTCTCCGTCAGGCCTGCCCTGGGTGAGCGACAGCAGGGGCAGATAGCTCACTGTAACATCACCCTCGTTCTGGCTCtgcacacccccccacccctccacatGCCGCAGCCCTTATATCAGAATATCAGCACTGGGTCACGCTCTGCTGATGAGATGGAACTGGTGACATCGCCGGGTTCACTTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU153390 lncRNA upstream 286141 10870773 ~ 10927943 (+) True G122328
TU153350 lncRNA upstream 460203 10752678 ~ 10753881 (+) False AMCG00002296
TU153270 lncRNA upstream 887433 10323529 ~ 10326651 (+) True G122236
TU153225 lncRNA upstream 1081884 10079747 ~ 10132200 (+) True G122198
TU153135 lncRNA upstream 1315204 9862956 ~ 9898880 (+) True G122126
TU153467 lncRNA downstream 89951 11334931 ~ 11348638 (+) True G122389
TU153478 lncRNA downstream 113981 11358961 ~ 11359521 (+) False AMCG00002310
TU153482 lncRNA downstream 120634 11365614 ~ 11367895 (+) False AMCG00002311
TU153499 lncRNA downstream 212664 11457644 ~ 11470525 (+) True G122417
TU153564 lncRNA downstream 277194 11522174 ~ 11522631 (+) True G122467
AMCG00002308 mRNA upstream 12083 11144009 ~ 11202001 (+) True AMCG00002308
AMCG00002306 mRNA upstream 73397 11127459 ~ 11140687 (+) True AMCG00002306
AMCG00002305 mRNA upstream 112080 11097491 ~ 11102004 (+) True AMCG00002305
AMCG00002304 mRNA upstream 218373 10992509 ~ 10995711 (+) True AMCG00002304
AMCG00002300 mRNA upstream 379273 10820245 ~ 10834811 (+) True AMCG00002300
AMCG00002307 mRNA downstream 10752 11255732 ~ 11271329 (+) True AMCG00002307
AMCG00002310 mRNA downstream 112572 11357552 ~ 11359840 (+) True AMCG00002310
AMCG00002311 mRNA downstream 122586 11367566 ~ 11379568 (+) True AMCG00002311
AMCG00002314 mRNA downstream 147975 11392955 ~ 11406464 (+) True AMCG00002314
AMCG00002316 mRNA downstream 320029 11565009 ~ 11587894 (+) True AMCG00002316
TU153306 other upstream 619780 10567912 ~ 10594304 (+) False AMCG00002294
TU153130 other upstream 1362778 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 1365072 9844280 ~ 9849012 (+) False AMCG00002272
TU152752 other upstream 2452005 8753726 ~ 8762079 (+) False AMCG00002245
TU152502 other upstream 3817523 7393800 ~ 7396561 (+) False AMCG00002215
TU153483 other downstream 131960 11376940 ~ 11377738 (+) False AMCG00002311
TU153583 other downstream 384032 11629012 ~ 11630892 (+) True G122482
TU153608 other downstream 443620 11688600 ~ 11694165 (+) True AMCG00002331
TU153704 other downstream 590459 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 888806 12133786 ~ 12140465 (+) True G122746

Expression Profile