RNA id: AMCG00002315


Basic Information

Item Value
RNA id AMCG00002315
length 2743
RNA type mRNA
GC content 0.62
exon number 14
gene id AMCG00002315
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11459063 ~ 11467699 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTAAGCagcttctttttctctctctcagctctcaTGTGTCCGGATGCCATGTTGCCCGGATATGGATTTCCTCCTCTCCCAGACTTCCAGCCCCACCTGCAAGCGTTCCCCTACAGAAGAGAGAGTGTTGACATGTGGATCCCTGGCTCACCTGAGTCCCCGGCCCGGGGCGAGGGCCTGAAGGACGGGTCGTTCCCCCGGCACCACCATATCGCTGTGTGCAAGCAAGAGACACTCACCTTCATCGAGCTGCCCGCCCTTCCCCCTGAGCCCACTGGGGGGCACCGCTCCCCTTCCCTGGACAGACAAGGGCCCTGTTTTGACATCCCCGAGGAATGGCCGAATGCACCGGCGAGCTGGTCCGACCCCAGGGTCCCGATGGAGGTGCAGCGCGGAGGCTGTGGCAGCGGGGGTGACCCATGCTGGTCCCTCTCACTGGCCTCCACGGAGTCCGAGggcctccctgccccccccggCCGGCCACCCTTGtccctctccctgcccctcAGCCCCCTCCCGCCGCCCACAGACAGAGACTCgtacccctcctcctctcccacctCCTCCCTGGGCTCTGGTCTGCGCAGTCCTGAGCTGTGCCGGCCGCAGAGGCGACCCTCACAGGGATCGGTTAAGGAGAAGAATGCCCGGCGCAAGATGCGTGTTTACTCCCCGGAGAGCCTGAGTGACGAGTCTCTGAGCAGCCCCAGCCTGGAGTGCGAGTACCTGTTCCCCGGGCCCttcctggaggaggagctgggaCCGccgccctgccctgccctgccacTGGAGGGAGCCGGAGACAACAGCAGCACTGGTGTGGAGAGCGAGCTGCCTGCCCCGGAGGACAGAGAGTCAGGGCTAGAGAGCCTCGACAGCGCAGAGGAGATGGGTGGCCCCGGGTCACGGGGGTTCCCTGGGGTCGTGGTGGAGCAGGAGCGGCGGCGTTTCTCGGCCTCGGAGCTGATCAGCCGGCTACAGCTGTCCCAGCGGAAGAGCTCCTTCACTCTGAAGCTGGGCAAGTCTCTGTCCGCCCGCGTGACCCACAGCAGCAATGGCAGCAAGGACCGCCCCCACCCGCTCCGCAGCCTCAGCCCCGACAGTAAGCACAGCTCCAGAGACCGCAGCTCTGCAGGGTCCATAGACAGCGCCCCTCACAGCCCCATGGGCCCAGGCCCACCGCTGCCCTCTGGTGACAGCGCCTCAATACTGCAGCGACGGAGCTCCAGGCCAAGTTTCAGGAGGGActctgtggaggaggggggCATGTGCACCCCCGCCTCCTTCAGCTGCACCAAGCGTCTCTCCAGATTCCTGCCCAACTTGGACCACTTCATGCTGTCCCGGGAGCTGTCGGACTGTCTGGGCACTCAGGAGAGACAGTGGCTCTTTTCCAAACTGCCCGAAGTGAAGGACGTGAGCGAGAGgtgggaagaggaggaggaggaggagaggcCCCTGCGCCGTGTCTACCTGCCCTACGTCACCAACCAGGCTTACCAGGAGCAGACCTACCAGCGCCTGCTGCATGAGAACCCTCGATTCCCAGGGATCCTGGCACGACTGGAGGAGGACCCAGTGTGTCAACGCCTGCCCCTCACCTCCTTCCTCATCCTCCCCTTCCAGAGGATCACTCGCCTTAAAATGCTGGTGGAGAACATCCTGAAGCGCACGGCGCCCGGCTCCCGGGACGAGGACACGGCAACCAAGGCCTTCAATGAGCTGAAGAAGCTGATCAAGGAGTGTAACTCCAGCGTGCAGTCCATGAAGAGGACCGAGGAGCTCATCCACCTCAACAAGAAAATTCATTTTGAGAGCAAGATCTTCCCCCTGATCTCTCAGTCCCGCTGGCTAGTGAAGCACGGTGAGCTGCTGGAGGTGGACACGCAGAGCATGAGCATATCCGGGACAAAGTTCAAGCTGCCCACGCGCCCTGTCTACCTGCACCTCTTCAACGACTGCCTGCTGCTGTCACGGAAGAAAGAGGCTGTGTACCAGGGCCATGAGGCGGCACTTCTGCCTGCTCCCCGCCCCCGCTCCCTGCGCAGCACCTGGAAGTTTGCGGTGTTTGTGCACGCCAAGATCGGGCAGCTGAAGGTCAAGGATTTGAGCCAGAAGGTGCAGGGCTTCTCAGGATACATCTTCCACCTGCAGCTCTGTGACGGACCCCAGCTAAAGCACCAGATCCTGCTGAAGGCACACACAGAGAGCGAAAAGCAGCGGTGGATTACAGCCATGCTCCCCCCGGACCCCGAGGGCAGTAGGGAGCAGATCAGTGAGAATGAAGACCGCTCCCAGGTGCAGTGCATTAAGAGCTACAAGGCCCAGGAGCACGATGAGCTCACGCTGGAGAAGGCCGACATCCTCCAGGTCAAGACCCTCACGAGCGACGGCTGGGTGGAGGGGATCAGGCTGTCTGACGGCGAGAGGGGCTGGTTCCCACAGAGCTACGTGGAGGAGATCACGAGTCGCAGCGCCCGGTTACGCAACCTCCGTGAGAACAACCGCATCAAGTGTGCCACACAGAAGCTGGAGGAGGAGTATCTGTAGtgcacagagctgcagcacCCTCCTGTGGCTGGACTGTACAACTGCATGACAGCACAGAAAGACACCAACCCTGCCACtctgccaacacacacacacacacacacacacacacacacgcacgcacacacacacacacacacacacacacacacacacacacactgtctcacacactcccacacatcCTGGCA

Function

GO:      GO:0005089,GO:0032319

KEGG:

id description
K20691 ARHGEF19, WGEF; Rho guanine nucleotide exchange factor 19

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153524 lncRNA downstream 9272 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 49477 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 184536 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 611862 10837804 ~ 10847201 (-) False AMCG00002301
TU153380 lncRNA downstream 645187 10812186 ~ 10813876 (-) True G122319
TU153646 lncRNA upstream 134273 11601972 ~ 11628435 (-) True G122530
TU153665 lncRNA upstream 246710 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 250831 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 376693 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 379382 11847081 ~ 11848192 (-) True G122633
AMCG00002312 mRNA downstream 154218 11293094 ~ 11304845 (-) True AMCG00002312
AMCG00002313 mRNA downstream 179930 11278426 ~ 11279133 (-) True AMCG00002313
AMCG00002303 mRNA downstream 530060 10926868 ~ 10929003 (-) True AMCG00002303
AMCG00002301 mRNA downstream 613079 10838915 ~ 10845984 (-) True AMCG00002301
AMCG00002302 mRNA downstream 669108 10755832 ~ 10789955 (-) True AMCG00002302
AMCG00002319 mRNA upstream 17060 11484759 ~ 11505246 (-) True AMCG00002319
AMCG00002318 mRNA upstream 38176 11505875 ~ 11509991 (-) True AMCG00002318
AMCG00002317 mRNA upstream 46301 11514000 ~ 11527918 (-) True AMCG00002317
AMCG00002322 mRNA upstream 63579 11531278 ~ 11532015 (-) True AMCG00002322
AMCG00002321 mRNA upstream 65851 11533550 ~ 11541279 (-) True AMCG00002321
TU153139 other downstream 1605988 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1625839 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3619652 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 7239186 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 7672519 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 57194 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 200056 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 263918 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 380771 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 404163 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile