RNA id: AMCG00002317


Basic Information

Item Value
RNA id AMCG00002317
length 6023
RNA type mRNA
GC content 0.54
exon number 21
gene id AMCG00002317
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11514000 ~ 11527918 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttttgaaaCGCGTTATGCTCATCTTGAATGcccagctaaaaaaaaaaaaagctttgactTTCGATGTTAGGTCAACATTAATACCGTCAGTATTATTATAACACAGCGGTAGATATGAAAATGGACCTAGAGGCCGGGCAGTCTGTGCATCTGAGTTTTTATTTCATCCCCATCGTGTGCAGCCTGTTAAAGGACTACCGCAGAACCGAAGACGGGCGGCGAGAACAGTAACATAGCAACCCCCCTAAAAAAGCAGGCAGGAAAGCTCCGAAAAGAACGCAAGAAATAGAACCACACATTCTGGAATTCGCCCGGGTGAGTGACAGATTCCACGGCTCGTTTTGACAGCACTTGACCCGAGCAGCAGCAGCGACAACAACAAGCGTATTGTATCGCATGCTTTCTGTGCTGCTCGGCCGGAGACCGGGGGCGCAGATGAAAGAGTCCCAAGACGGCGTGACCTCGCAAAGAGTCAACACCAGAGACAGATAGAGAAGAGAGCCGGATAAACGGAAAGGAAAAGCGGCGTGGactgcctccctctcccccctcgTCTCTGACTGCGTCTGCCTCGCCGTCGGGACAGTGGACAGTCTGCGGCAGCCCCATCGATCTCACCGTAGGCGGGCCAGGAGACCTCCAGACATGGATCAACTGAAAGTCAAAGACCGCATCCTGGAGAACATCTCTCTCTCGGTCAAAAAGctCCAGAGTTACTTCGCCGCCTGCGAGGATGAGACGCCCGCCATCCGCAACCATGACCGGGTCCTGCAGCGCCTCTGTGAGCACCTGGACCACGCCCTGCTATATGGGCTGCAGGACATCTCCTCGGGGTACTGGGTGCTGGTGCTGCACTTTACGCGGCGCGAGGCAGTCAGACAGATCGAGGAGCTGCAGCACATCGCCACCAACCTGGGCCGCAGTCGGGCCTGGCTGTACCTGGCTCTGAGCGAGAGCTCTCTGGAGAGCTACCTGCGGCTGTTCCAGGAGAACCAGGGCCTGCTGCACAAGTACTACTTCAAGAACGCGCTGGTCTGCAGTGATGACCACCTTGCACTCTTCCTCACGCTGGTCTCTGGCCTGGAGTTCATCCGCTTTGACCTAGAGCTGAACTTGCTGGACTTTGAGGAGCGGCTGCCCAGCTCTGACAGCCTGTCCCTGCACTCCTTCACCTCCCTCACCTCCACCAACCTGGAGTGGGACGACAGCGCCATCGCCCCCTCCAGTGAGGATTATGATTTTGGTGATGTGTTCCCTGTCCTGCAGTCCATGCCCAGTGCAGACTGGGAAGAGGGTGACCTGACCGAGTCGATCAGTGCCCCGCACTCTGTGTCCTGCGATCCTCCCTCCAACAGGGCGGCGCCGCGGAGCCCCACGCTGCGGGTGAACCCATTTAATGAGGACTCGGACACCAACCCCTCCACAGACGCCACGCCCGTGCACTGCCCCCCCCGCCGCAGCCAGGGGGAGGGCGACGACACCGAGAGCACCGGCACAGAGCTCGAGGTCATCAGGCTGGCCCGGCGCCGGAAGGTGGGGAAGAAGAAGCGAGGGAAGGGAGGCTCTGTTAGCAGCTCCGACCGACCCAGCGCCCCGGAGAGGGAGGTGGCGGAGGGCACAGAGGGGCCCCCTTTGAAGATGGACGTCATGGACAGCGAGAGGCGCATGGCGGGAGGCGGGGAGAGGAGGCTGGAGGGGCAGGGGGTGGAGAAtgacgaggaggaggagcaggaggaggaggaggaggaggaagggggggagTGCGGCGAGGGCCTGCTACGTCTCCCCAAGATGACGGACACCTCGATGGACAGTGTGGGGCAGCCACTGCGGGATGTCATCGATCAGCTGGACTGCCAGGGCTGGGGGGCCGGGGCGGGGAGAGGGCGAGGGAGGGGGTCGGCGGCATCGGGGCAGCCCAGAACCTCTGAGCCCCCCcagccacccccaccccagcaGCAGCCCTTTCGGAATGAGGCCGGGGGAAAGCCGCCTGACCCCGCCCCCTCAcccctctcctgctctctggCCCAGGACTCCCACTACCTGCATGCCCCCCCGCCCTCAGACTTCTACCGCTTTACCGCAGAGAGTGCAGGCCCTGTTACCCCAGGTGGTGGCCACTATGACCCTGCAGGGCCTGGCCAGCCGGCGCATGTTTGCAGTGGCTatgagggtgagggagagagagaggcggcaCCGGGAACCACCCCCCAACCCCTAGACACCCGGGGAcaaggggaggaagaggaggaggaggaggaaggacaGAAGACGCCGGTGCAGAACGGCTCAGCCCTGCCCCCAGGCATGTCtccagaggaagaggaagaagaagatgagGAGAGGCTGCCCCCCACCAGCCCCTCGGAGACCAGCCACCAGTCAGAATTCAGGGTGGACAACAACCATCTCCTGCTACTGATGATCCATGTGTTCAGAGAGAACGAGGAACAGCTTTTCAAGATGGTCAAGATGAGCACAGGGCACATGGAGGGGAACCTGCAGCCACTGTACCTGCTGCTGACAGACTGCTACATCTACCTGCTGAGGAAAGgtgCTGCAGAGAAGCCCTACACTGTGGAGGAGGCAGTGTCCTACAACGAGCTGGACTACATCTCTgtGGGAATGGACCAACAGACTGTCATGCTGGTTTGCACTAACAGGCGCAGACAGTTCCTCCTGGACACAGCAGACCACTCCCTGACAGAgTGGTTCTTGTGCGCTCTGCAGTCTGCGATGGTAAAGGGGTGCAGGGAGCCGCCGTACCCGTCTGTGCTTACGGACGCCACCATGGAGAGACTGGCGCTCACCAAATTTGTGGCACAGGAGTCGCACTGTGAGgtgTCAGAGGTATGTATCCAGCTGTACTCTCTGGTGCACTGGGAGGACCCAATGGACGTGTCGCTGGGCCCCCAGGCTGGGCTGTACGGCTCCCCCGACACCTCTGTCACCAAGGAGGGACCCCTGATGTACCGTGTTGGCACCTCCTACCTGGGCAAGGAGCTGTGGAAGAGCTGCTACCTGGTGCTCAGCAATGGCATTCTGTACCAGTACCCTGAGAGGACAGACGTCATCCCACTGCTGTCCATCAACATGGGgggGGAGCAGTGTGGGGGGTGTCGCCGTGCGAACACCATAGAGCGGCCCCACTCCTTCCAGGTGATTCTGTCAGAGCGCCCCCCGCTGGAGCTCAGTGCCAACAGTGAGCAGGACATGGCTGACTGGATGCAGTACCTGTGCCAGTCTGTGTCCAAAGGGGTGGTGCCCCCAGGTGTGGCCCCGGCCCCGTGCTTGGCGTGCTGCCTGGTGCTGACGGACAAATGGCTGTTCACCTGCCACCAGGACTGCCAAACCAGCTTCTTCCGCGAACTGGGGGGTGCGGAGCTCGCCCACATCAGGGGGGTGCGGCTGGAGGGGCAGCGGGAGTACTGCATCATCgagTTTGTGGAGGACCGCAGGCAGTTCCTCCCACCCTGGGTGCTGTACTTCAGCTGCTGTGGGGAAAGGGACCGGCTGCtgcaggctctggaggaggcGTGGAGACACATCTACCAGGTGTCTCTGCCCCGGCTGCCTCTGCAGGACACCTCGGTGCAGAAGAAGTGTGGCGACGCGCTGTCCCTTCTGAAGAGCGTCTGGCAGCGCAGCGACAGTCTCCACCGCGGCCGTGCTCAGAGGGAGCCCTGGTGCTGAGATAGCGCGAGGGAGCGGCACACAGAGGGAACCCTAGTAGCCCCTGAGATGGAGCGGTGGAatgaaggagaggagagagagtagGGAAAGAGGGAGCAGAATATcagaaggaggagaaaaaagagaGGACAGAAGTTTTGTAGTttaaagaaggaagaaaaacgCACAAAGACTACTTTAACGGTTCAAAACAGAGGCGATCACAGCGTCtccaacaaaaacagcaacaccaCTGACATTAGCAATGAATctggggtgtgggggtggggagacTACACCTCTCTATAGCTCTGTACTGTCCTTTgtctagtttgttttttatttttgtgattataataataatttgttccTTCTGCCTGTATTGTTAAGACTGGGGTGGCGGGGAGATCTGCAGAAGATTATTCCActgtaggagagagagagacagagggagacgAAGAGTCTAACTGCTCATGGAGACTTATTCGATATGAAAAGACTAAAACGAGTGGTAGACTGAAGACGGGAGTTTGTCGTCAGTCAGCAGACGGACTGCACACCATTTATCGTTTGTACCTGCTGCATTGGCCTTGGGGTTCGTATTGTTATGAGCACATGGCAGCCCAGGCTCTGAGCCCTCCCTGCCACCTCACCTATCTACTGATTtacttttgtcattttatatgttttttttaattttatttccttgttggCAAATTGGTGGTAAGTTTCagttcacacaaaaacaaaagagtaATGTaggttgtattattattatttggtggGCATGGTTACAGTTTCTTTGCAAAGACAACTCACGGTGAGGTGCTAACTTAGTCATAGTAAAAGCTTTTTCAATATGACCTTTAAGCACTAAAAATGATTCTTTAAAGTAATGGCAGAAGtgtataataatgatattattcTCATAAACAGAGATGAGGTGTTTGAAAGCTGGATCTTAGGGttactatttaaatatactgttcTGTAGATACTGCTCTATTTGCACTTTTCCCCCAAGGAGTCTGaatttgtgtgtttgatgtcggtgcagtttttttctttgattgcACACATCACAAGTGCCTGTGAAGGAGGAGACGGACTGGTCACACTGTCTCCCCGAGTCCTCTCTGCTTGCTACGTTTCCTTCTGGCTCCTGCGCCCTCCTGTTGTCTCTGTCGCTtcttgtccctctctctcctcccccttctGTCATGCTATGACCATATATACACTACAGGTGACAGGCACTGTGTCTGCTGCACTAAGAGGCTCCGCAGTCTTACATCAGGGTGGGAATCAGGGAGTGGGGGGGTCTAGATCAATGGTACTGACCATCTGTTATAGTACGAGCTGTGAGAGCCCAGTGAAGGCCGCTCTGAGGCGCAGGAGGAGAGCAGCCCTGGCAGCGGGAGAGTTGTGCTCAGTGGGTTGCAGGGTTACATTTGTCTAAAATGCCAGATGTTGCGGTTTCCTGACTCgtaatacagtatatttgaaCTGTTCGCATTCACGTCTCTTTTTATTCCCCCAACGCAGACCTGTCAGGATCTGAAGGTTTAGGTttctatgaaataaataaaaatgataaagaaaaaagaaaaataatactactacCATAGTTTAACTCTTTGTCACCTCCATACGTTGTGTGAGTAtgtctgagagtgtgtgtgtgtgagtgagtgtgggcAGGAGTGCCAGTGCCAGACAGCTGTGGCTAGTGGTGTTCAGTAAACTGGGGTGTCCAGATGTTTACAGCTGGGGCAACAGGGCAGAGAGTGGAGAGATGGGATTGATAGGGAAGAAGTGGACATagaaagtaatacaataaaactgggGGTGgtagaaagagagggggggctGCAAACTAGCCAGGGTAGGCATACAATTCCTTTAAGtaagaaaggaaagaaaccGTGAGGTGAGAGTGGCTCATGTATATggtgtgtgggtgggggcaGCTGACAGCGGGTATTGAGCAggtcaaaactaaaataatacaattatcatCAAAGAAcgatcatatatatattatgggtGTTGCACATTGTTCGGGTTTAAGGCTCTGAATAAACACAGTACAAGCAGGTCAGAGGCTAAACTGTGGGCTGCCCTGGATTGGTCTAGCTCTATCCCATGCATGGACCTAAACCTGCTCTGTGTTCTCTCCTGGAGGGGTTGGTACAGAATCTTCAGTAGTGAATGTATAATAGTGTTAACCTCAAGTTACACATCCGTAATATCTGCATGTTtcaaagtttctttttttattaatatacatctctatatatagatatatatcacTGATATTGTTATAAtgctttatgtgtgtgtgtat

Function

GO: NA

KEGG:

id description
K15348 PLEKHM2, SKIP; pleckstrin homology domain-containing family M member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153524 lncRNA downstream 64209 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 104414 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 239473 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 666799 10837804 ~ 10847201 (-) False AMCG00002301
TU153380 lncRNA downstream 700124 10812186 ~ 10813876 (-) True G122319
TU153646 lncRNA upstream 74054 11601972 ~ 11628435 (-) True G122530
TU153665 lncRNA upstream 186491 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 190612 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 316474 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 319163 11847081 ~ 11848192 (-) True G122633
AMCG00002318 mRNA downstream 4009 11505875 ~ 11509991 (-) True AMCG00002318
AMCG00002319 mRNA downstream 8754 11484759 ~ 11505246 (-) True AMCG00002319
AMCG00002315 mRNA downstream 46301 11459063 ~ 11467699 (-) True AMCG00002315
AMCG00002312 mRNA downstream 209155 11293094 ~ 11304845 (-) True AMCG00002312
AMCG00002313 mRNA downstream 234867 11278426 ~ 11279133 (-) True AMCG00002313
AMCG00002322 mRNA upstream 3360 11531278 ~ 11532015 (-) True AMCG00002322
AMCG00002321 mRNA upstream 5632 11533550 ~ 11541279 (-) True AMCG00002321
AMCG00002320 mRNA upstream 14773 11542691 ~ 11546457 (-) True AMCG00002320
AMCG00002328 mRNA upstream 84478 11612396 ~ 11620659 (-) True AMCG00002328
AMCG00002326 mRNA upstream 101231 11629149 ~ 11630909 (-) True AMCG00002326
TU153139 other downstream 1660925 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1680776 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3674589 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 7294123 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 7727456 3784236 ~ 3786544 (-) True G120927
TU153660 other upstream 139837 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 203699 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 320552 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 343944 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 467910 11995828 ~ 12006351 (-) True AMCG00002368

Expression Profile