RNA id: AMCG00002318


Basic Information

Item Value
RNA id AMCG00002318
length 2042
RNA type mRNA
GC content 0.60
exon number 12
gene id AMCG00002318
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11505875 ~ 11509991 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGTTAGGGGGTGAGGTGCTGAAAGGTGCAGGGACTGGGCAGCAGGCAGGTGAGTGATGATGCAATGCTTTTCCAGGTGCTGATGGATTTGTTCTCCAAGCTGCACTCACCCTCCAGCTCCCCCCGCAGACAGGGGGCAGTGAAGCGCCACACCTCCTGCCCCAGCAGGGGATCGATGCGGTGTGGTCTGGGCAAGGGGGCACAGCGCGACCTGGCTAACTTCTTCCGGGTCAGGAGGAGGCCTAATCTAGAGCGCAGGAAGTCCTTCTCCCTGGAAGAGGTGTTGGGCACCGCTTGCCAGGAGGGGGATGTGCCTGCTGTCCCTGCCCTCCCGCTGTCACTGATGGAGGACCAAGTGGGTCCTGGGGCACAAGGGGTGGCTGAACAGGAGCTCAGCGATGCAGCATTTGATCTGAGCTTTGGAGAAGGATGGAGAGAGACTGGGGCAGCCACAGAGACCGAGACACAGTCCGAGAGTGACGGAGACTTCCCCAGTGAACAGCTCACCCTGGAATCCAAGTTTCTCCGTGCCTtgCCCCTGTATCAGGAGTACTGGCTGCAGTGTTTGCAGCAGGAGATGCAGAGGAGGAGGCAGCGGCaccactctctccctcagctGGCCGCCACCTTGGCCATCCCCAGTCTGCTGTCCTGCTCCTTGACCTCGCTGACCACACCCACCGCCACCAGCTCCCTGCCCCAGCCCCCCTCACACTCACGCTCCCTGGGAGACGACCCCTGCTGCTTCTGGCAGGAGCTGCCTGAGGTTCGAGAAAGTGGCCTGCTGGACTCGATGACCTTGAGGCAGAAAAGGCAGCAGGAGGCCATGTTTGAACTCATCGTGTCTGAGGCCTCGTACCTGAAGAGCCTGACGGTGGTGGTGAATCACTTCCTGGGGTCGTCAGAGCTGCGTCAGGCCCTGCAGCCGCTGGAGCTGCACACCCTCTTCTCCAACCTGCCACGTGTCCGGGAGGTCAGCCAAAGgttcTTCTTGTCTCTGGAGAGCCGTCTGGAGGAGAGTCTGTTGATCTCTGACCTCAGTGACATCGTGCTGCATCACCGTGACGCCCTCAGGAGTGTGTATGTGCCCTACGTCACCAACCAGATGTACCAGGAGGCCCTCGCCCAGCGCCTGCTGAAGTCGAATGAGCCATTCCTGGCCGTGGTGCGCAGGCTGGAGAGCGCCCCGCTGTGTCAGAGACAGAACCTGAAGTCCTTCCTGGTGCTGCCCTTCCAGAGGATCACGCGGCTCCGCATCATCCTAGAGATTGTGGAGGAGTGCAACAGCAGCGTGTCCAGGATGAGGCAGACTGAGGAGCTGGTGCTGCTGGAGAAGCTGATGGACTTCAGCAGAGTCAAGTTGCTGCCACTGATCAGTAGGGGGCGCTGGCTGGTGCGGGAAGGGACACTGCAACAGGTGATGGTGGAGGAGTGGCCCGGGGGGGCGCACCGGAGCAGGGTCTCTCTGAGGGCCATCCACCTGCACCTCTTCAAcgacctgctgctgctgtcacaCAGGGAGGAGGGCAGGTTTGTCGTGGAGTACTATGCTGGTCCCAGTAATGTCAGGGCGGAGCATCTGGCAGCCAAGCCCCTGGGTCTGCCCAGCGAGAGCTTCCTGCTGCACATGAGCCATACCACCCACCCCACTGCCATCATCCTGCACACATCGAACAGCACAGAACTGCACCACTGGATCAGAGCCATTTCACCACAGAGTGGCATAGAGGGGGGGCAGGCTTGACAGGTAGCGGAGTGCTGTCTCCCTGCTGTGGCAGTTCCAGGAGTGGAGGGCCAGAGAGGGATTGCTGCCTTACAGAGAGACCTGGACTGGGGTGGCCTTCTGGGAGCCCAGCgttattctactgcactgttgcACTGTTCTACActtctgtactgcactgtactgcacttctTTACTACTGTACCCACTTATTCTGTATCTGAGGGCTCTGTGTGAGCTGCCCCAGAGTCCTGCCACCCCCAAGTTACTATGCACTGCTCTTCTAGCATCTCATGTGTTgtgaattttaataataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153524 lncRNA downstream 56084 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 96289 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 231348 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 658674 10837804 ~ 10847201 (-) False AMCG00002301
TU153380 lncRNA downstream 691999 10812186 ~ 10813876 (-) True G122319
TU153646 lncRNA upstream 91981 11601972 ~ 11628435 (-) True G122530
TU153665 lncRNA upstream 204418 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 208539 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 334401 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 337090 11847081 ~ 11848192 (-) True G122633
AMCG00002319 mRNA downstream 629 11484759 ~ 11505246 (-) True AMCG00002319
AMCG00002315 mRNA downstream 38176 11459063 ~ 11467699 (-) True AMCG00002315
AMCG00002312 mRNA downstream 201030 11293094 ~ 11304845 (-) True AMCG00002312
AMCG00002313 mRNA downstream 226742 11278426 ~ 11279133 (-) True AMCG00002313
AMCG00002303 mRNA downstream 576872 10926868 ~ 10929003 (-) True AMCG00002303
AMCG00002317 mRNA upstream 4009 11514000 ~ 11527918 (-) True AMCG00002317
AMCG00002322 mRNA upstream 21287 11531278 ~ 11532015 (-) True AMCG00002322
AMCG00002321 mRNA upstream 23559 11533550 ~ 11541279 (-) True AMCG00002321
AMCG00002320 mRNA upstream 32700 11542691 ~ 11546457 (-) True AMCG00002320
AMCG00002328 mRNA upstream 102405 11612396 ~ 11620659 (-) True AMCG00002328
TU153139 other downstream 1652800 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1672651 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3666464 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 7285998 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 7719331 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 14902 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 157764 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 221626 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 338479 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 361871 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile