RNA id: AMCG00002319


Basic Information

Item Value
RNA id AMCG00002319
length 6058
RNA type mRNA
GC content 0.55
exon number 29
gene id AMCG00002319
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11484759 ~ 11505246 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCAGCTGCCGCTTCTGCTGAGAGAGCGAGGGTTTTGATTCCGTGACCCAGTGTAGTGGTGCCCAGCTTTGTCGCCTTTGCCTGTGGGAGGTGATGGGCAGGCAGAGAGGAGGCAGGGCACAGTGAGAGGGCAGGAGGTGGAGTTATGGCTCGGCTGCCTGTGCCCGGGTCCCTGCTGGTACCAGACTGGCACCTCAGCCCCGACAGCGAGGAGTATTTCCGCAGGAGCCACAGGAAGCGGTTTGGTCTGTTGGATGCTCCGGTGCTGCCCCCGCAGCTGGCCGTGGACACCGTCGGCTACAAGGTGTTTCTCTGTGGGAAGAGCGGGGTCGGCAAGACGGCCCTAGCAGCTCACTTGGCTGGCCAGGAGGTGCCCAGCCTGCACCACGAGACCACGGGGATCCAGACCAGTGTGGTGTTGTGGCCGGCGATGCTGAGGGCGAGCGGCCAGGTGCTGCTGTTCCGGCTGCAGCTGTGGGACTGCGGGGAGAACGCCCTGCGCCGGTTCGACCATCTGCTCCCAGCCTGTAAGGACCAAGCAGACGCGGTGCTCTTCCTGTTCTCCTTCACAGACCGCACCTCCTTTGATGACCTGTCCAATCAGATTGCCCGGGGCTCGGACCCCTCGGACAGTGCCGTACAGCTGGTGGTGGGCACCAAGTTTGACCTATTCATGCACAGCGATGTGACGGAGCGCGAGGTGCGCGATTTCCAGCAGGTGTGGGGGGTGCCTGTGTTCCGGGTCCAGAGCGGTGGGGCCACGGTGGGGCTGGAGGACATCGCGCCACTCCTCACCACCCTGGCGGAGCGGCTGTGGCACAGGGACATGCAGGCGGCCGGGCTGTGCGCCCCACCGCAGCCGGAGCCCACACACAGCTGACCGGACTGCGGCTCGGGTTCGAGGAGAGAGCAGGCGAAGGAGGGGGCTGAGCTCCGTTGAGAGCCTGGGGCGACGATGtgcaaggaaaaaacaaaactacattcACACCTAGACCTGGAGGAGTTCAGTTCCTCTTGGGGACACACTGCAGATCCAGGGAGACAAGACGGTCCTTAATATTGATATGTGTGCTAGGAAAAATCTGTCTTAATGTACTGCATATTAAACATTGAAAAGAATCTGAAGCATTGAGTTAAAACCTTCTAGCATCTTACCTTGGCATAACATCCTCCTAAAACTACTGACAATGCgtttattatgataattgcaataatgattgtaataatcataataaatgcattgtcaCTTACAGATGCATTGTCACTGTTGCGGTGCCGGGCCGTGTGGAAGCCAGCATGTCATTTCAGGTTTCTCCTTTTCGTGTGTCCCACCTGGCAGTGATCGTTCCCTCCTGTTCAAGCGTGGCTGTTCcgttacttttgtatttgtttatgtttgctGTTTGCAATAACAGTGGTTCTGTTCCAGTCAGGAAATGTACAGAAAACGTATCAAAGCAGTTGAACACAAGGTTTTCATTCCTgccatgatgatgatgatgatgatgatgatggtattGTTCTGTTCTGAATTTCATAGCCTGTGCAGTTCTGActaatgagaaaaaatacacCCTGTCCTCTCCCTCCAACCCACCTCCTACCTCCCCCTCCCTGCAGAGAGATTTgctgtgttgcatttttttcccaccataaatatttcatgtttcCTTATGTGAGTGCagcaatagagagagagggggaggggagggcaggggagggggagagtagactcagagagagagaggagagattaTTGAAAATCCAATATTGTAACTGTATTCTGTGCTGCACTGTACTCTGCTGTGCtctttgtactgtactgtgggattcaaaataaagattaatgcTCCCAGTTCTGGCACTGTGCAACCCCACCACCCTCCCCCCTCTGGGACAGGAAGCGCTGGCGTAAGGTTGCCCTGGCCAGGAGTATCACTTTGGGGGAAGGTTGGCGTGGTTCGGCGTGCCTATCAGGGCTCCGTGCTGCAGCCCACAGTGCCGAGCGATTGCAGGAGACGCTGCAGCGAAGAGTGGAGGAAGACCATGATGCGGAAGAAGAGCTCAGAGGCGCAGGCTGATGACAGGGACGTCCTGCTGGACCTGGGGCCCACTGGCGAGACCCGGGGATCCGAGGGCTACGGCAGCCTGCAGAACGGAGGCTACGTCCCGGCCCGATACctGGAGGACGAGGACGACGATGACCCGATCTATGTCCAGTGTGAGAGTGGGGGACGCCGCCCCCCCCAGCCCAGCGGGAACTACTTCAGAGACGGCAGGACCAAGATCGACTTCGTGCTGGTGTGGGAGGTGCGCACGCAGTCTCGGAGGAAGAAGAGGTCGAAAGGGCGCCACCAGGACCTGGCAAGGCCGGGCAGTGCTgaggtgggggaggaggagggggaggaacGGCGAGCGGACAGCCGCCGCTCGCAGCACCAGCGCTGGAGAGAGAAGTACATCCGAAACCTTCAGAACGCAGGACTGCTGCTGGAGAAGGAGGAGACGGTGAGCAAGAAGAAGACTCTTCACTACCTGAAGCTGAGCGCGCCCTGGGACGTGCTGGTGTACTACGCAGAAGAGCTGTGTCTGAGAGCTCCTCTACAGGCCCAGCCCAACCCTGACCTCAACACTTCAGCCCGTGTGCTGGAGAACCTCTGCATCCCCAACCCCCTGGCTGAGACGGTGCCCAACAAGCCACTTGACTACTACACCTGTGCCTTCCGCAAATCCAAGACAGACAGGTTCCTGGGCTGTGAGGACCAGGACAGCTACTTCAccaacacacagagacacaggatCGTGTACGAGATCCTGTCGTGCGCGCTGTACGGGAAGAGGAAGCGAGCCGAGGTGGGCGTGGAGAGGCTGCTGAATGAGGGAGCCTTCTGTGCCGCCTTCCCCCTGCACGAGGGATCCTTCGAGCTGCCAGAGTGTGAGGTTCCCCCAGAGGCCCTGAACCAGCGGCAGGTTCTGTACCAGTACTGGGCCCGCTGGTCCAAATGGTACAAGTACCAGCCACTGGACCACATCCGAGAGTACTTTGGGGAGAAGATCGCCATCTACTTTGCCTGGCTGGgCTTCTATACTGCCTGGCTTCTCCCTGCTGCTGTGGTTGGAAGTTTCGTCTTTGTTTCTGGAATTGTCTCCATGGGATCGAACACTCCTGCTGAGGAGATCTGCTCCAGTGGGGGGCGCTATCAGATGTGCCCTCTGTGCGAGACCTGCAGCGGCTGGAATATCTCTGAGATCTGTTCCATGGCCAAGATGGGGTATCTGTTTGACCACCCTGGCACAGTGTTCTTTAGTGTGTTCATGTCCTTCTGGGCCGTGACCTTCCTTGAGTACTGGAAGCGCAAGAACGCCACGCTGGCGCACCACTGGGACTGCATGGGCTTCCACGAGGATGAGgAGCGGCCACGGCCAGAGTTCGCAGCCATGGCACCGGCGATGGAGCAGAACCCAGTTACGGGTGTGAAGGAGCCCTACTTCTCTGAAAAGGACCGGCTCTCCCGCATCCTCACCGGCTCCAtggtcatcatcatcatgctGTGTGTTGTGATGATCTTCCTGGTGACGGTGATAATGTACCGCGGCATCGTGAGCATGATGATGTACCACACTGAGAGCCCAGTCCTGCACGCACAGGCCGGGAATATCGCGAACATCTCGAGCAGCATGGTGAACCTGGCCCTGATCCTGCTGATGGGACAGGTGTACACAGCGCTGGCCCAGCAGCTCACCAAGTGGGAGATGCACCGCACGCAGACGCAGTACGAGGACGCCTTTACCTTCAAGGTCTTCGTCTTCCAGTTCGTCAACTTCTACTCGTCCCCTTTCTACGTGGCGTTCTTCAAAGGCCGGTTTGTGGGCTACCCTGGGCACTATGGTACCCTGTTTGGCATGAGGAACGAAGATtgtggTCCGGGGGGCTGCCTGATCGAGCTGGCTGAGCAGTTATTCATCATCATGGTGGGAAAACAGATCATCAGCAACATCCAGGAGTTTGTCATCCCGAAGGTGAAGGCGTGGCAGCAGAAGAGGGAGTTGGCGGTGGGCCGGGGCAGCCGGTTGGGCCAGGAGCTGCGGCGCTGGGAGGAGGACTGCCAGCTGCTGCGATGTGAGGGGCTGTTCGAGGAGTACCTGGAGATGGtGCTGCAGTTTGGTTTCATAACTATCTTCGTGGCCGCGTTCCCCCTGGCCCCTCTGTTTGCCCTGCTCAACAACTGGGTGGAGATCCGCCTGGACGCGCAGAAGTTTGTGTGCGAGTACCGGCGACCCGTGGCCGAGCGCGCACAAAATATTGGTGTCTGGTTCAACATCCTGGAGGCGCTGTCTCACCTGTCCGTCATCGTCAACgCGTTCCTCATTGCCTTCACCTCAGACTTCCTGCCCCGGCTGCTGTATCAGTACAAGTTCAACAGCAGCCTGCATGGCTATGTTAACTTCACCCTGGCCCACGCCCCCCCCAGCTACCAACACCCCGAATACATGTACTGCAGgtACAAAGCGTTTCGAGACAGTGATGGAAACTACACTCTGTTTTACTGGGAGCTGCTGGCCGTCAGACTGGGCTTCATTATCGTCTTTGAGCATGTGGTGTTCTTCCTGCTGAGGGTGATAGACTGGCTGGTCCCGGACGTGCCGGAGTCTCTGGAGCTCAAGGTGAAGAGAGAGCGCTACCTGGCCAAGCAGGCGCTGGCCGACAACCAGGATGCCCTGTTGCTGGTGAGTCGAGGTTCAGCATCCAGCCCAGCAAGCGATGGTTCTCCATGCAACATGAGCGAGCGCCTGTGAGGAGATGGACAGAGATGTCCAGCCCGCAGagcgagggggagagagaacCAGAGGGATAGAAagaagagagagcgagagcgcaGCATGTGTGACTGGCTGGGGATGCAGGAAGTTGACTGTTGTTGCTGCTGGAACCTCAGGATACTCTGTTAAAGACTTTCTTCGACtggagtgtctgtctgtctctctttctctctttttctctttctctctttctgtctgccACTGTCTCTTTGTTTATCTCAGGCAGTAAAGGCCAGTCCTGGTCTGATGGGTGGTGGGAGTCCCTCCAATGTTGAAagaatgttaaattgtccccGTCAATAATATATGGCAAACTCCATAGGCATAGGGGACGCCTCTCAATATTGAGAGAGCGTAAATAATTTGCTCATAGGCATAATTTACAGGTGGAACATGTTCCCCCCCACTTCTGAAACGCAACCTACGTCACTATGTGGTCCTATAAGAGCCCCAGTGTGTTATATTCAGCTTCCTGTCCCATCTTACCTGAACTACTACTCCTGCTAAAGTGAGCCTGGTGTCCAGTGTGTTCCCAGCACTGCAGGGCTGAGACCCAGGGCAGCCCAACACTGAGACGAGACTGAGACTGCGCAGGTTCCAGGCTGTCAGTCTAATTATCTGTCTGTATGTCCATCACAGTTGGACCTGCCAGGCAGCGACCGCACCAGCTTCTAGGTATTAATTAATCTGTATTATCTGTTCGGAGGCTCGTGATtggttcatttgtttgttttgtttgtcagacGTGTTATAAAAGAGCTGTAAAAGGTGACGCAGCACTAGATTTATATATTACTAATAAAGTAAACGCACACACTCACGTAcatgcacacaagcacacacatacgctatcacacacatacacgcactcTGGAGATGTTTCAGAATGTAATGTCTctagttaattaatttgttcagtttACAACAAACTGTGGACCTAAATGTACGAGCATGCAGACAAACTCCTGTTTCTTTCTTGAAATATCTTCTGTGCGTAACTTTATACTGTACCTGGGAAATGTCCCGTGTGTCCATAGTCCAGctctatatttgtatttaaggaAAATGGGAATGCAGGAGCAATCAGCAATGGCAGCCGTCTCATTGGTTGTGTAACGCTATGTACTACTATAACAACTGCTACTGTGAAACACGCGTGTATAAATTATTATGGGGCGCGTGTCAGTGTAGGCTgctttgatgttgttgttgcctTTGGGAATAAATCTGTCTGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153524 lncRNA downstream 34968 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 75173 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 210232 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 637558 10837804 ~ 10847201 (-) False AMCG00002301
TU153380 lncRNA downstream 670883 10812186 ~ 10813876 (-) True G122319
TU153646 lncRNA upstream 96726 11601972 ~ 11628435 (-) True G122530
TU153665 lncRNA upstream 209163 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 213284 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 339146 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 341835 11847081 ~ 11848192 (-) True G122633
AMCG00002315 mRNA downstream 17060 11459063 ~ 11467699 (-) True AMCG00002315
AMCG00002312 mRNA downstream 179914 11293094 ~ 11304845 (-) True AMCG00002312
AMCG00002313 mRNA downstream 205626 11278426 ~ 11279133 (-) True AMCG00002313
AMCG00002303 mRNA downstream 555756 10926868 ~ 10929003 (-) True AMCG00002303
AMCG00002301 mRNA downstream 638775 10838915 ~ 10845984 (-) True AMCG00002301
AMCG00002318 mRNA upstream 629 11505875 ~ 11509991 (-) True AMCG00002318
AMCG00002317 mRNA upstream 8754 11514000 ~ 11527918 (-) True AMCG00002317
AMCG00002322 mRNA upstream 26032 11531278 ~ 11532015 (-) True AMCG00002322
AMCG00002321 mRNA upstream 28304 11533550 ~ 11541279 (-) True AMCG00002321
AMCG00002320 mRNA upstream 37445 11542691 ~ 11546457 (-) True AMCG00002320
TU153139 other downstream 1631684 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1651535 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3645348 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 7264882 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 7698215 3784236 ~ 3786544 (-) True G120927
TU153575 other upstream 19647 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 162509 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 226371 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 343224 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 366616 11871862 ~ 11872862 (-) False AMCG00002351

Expression Profile