RNA id: AMCG00002321


Basic Information

Item Value
RNA id AMCG00002321
length 2217
RNA type mRNA
GC content 0.65
exon number 9
gene id AMCG00002321
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11533550 ~ 11541279 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCTCACGGTGTTCTGCGTCCGGAGAGACCGCTCCGAAGTCACTTTCTCCATGGAGGTTTCCCCAGAGCTGGAGCTACGGGATTTCATAGCCCTTTGCGAGCTTGAGTCGGGAATCCCCGCCGCAGAAATACAGATCACATATGCAGAGCAGCCCCTGGGCGACACTGCTCGCGCGCTCGCCACCTATGGCCTGAAGGATGGCGATGTGGTGGTGCTCCGGCAGGCAGATAGACCCCCATCCGTGCAGCCCGCCTTCCCAGGTATGAGGACTCTGGGCGCCCCCCCCCTGCTGGACACAGAGGCGTTCTGTGacttgCTCCATCGCTGTTCCTGGGACCTCCACCGGGCGCCGCCCCACCCCAGCAGCCATGCAGCAGCAgcgctcccccccccccccccgcccccaccccctacCCTGCAGCCTGGCTCCAGCTCCGCCTCCTCTCCCCAGGGATTGGACGATCCAGCCCTGCTGAGGGATATGCTGCTGGCCAATCCACACGAGCTATCCCTGCTGAAGGAGAGGAACCCCCCTCTGGCAGAGGCACTGCTGAGTGGGGACCTGGAGCGGTTCACCAAGGTGCTgctggagcagcagcaggagcgTGCGCGCCGCGAGCAGGAGCGGATTCGGCTGCTGACCGCTGACCCCTTCGACCTTGAGGCCCAGGCCAAGATTGAGGAGGACATCAGGCAGCACAACATCGAGGAAAACATGACGATCGCGATGGAGGAGGCGCCTGAGAGCTTCGGCCAGGTGGTGATGCTCTACATCAACTGCAAGGTCAACGGGCACCCGGTCAAGGCCTTCGTGGACTCAGgTGCCCAGATGACCATCATGAGCCAGGCCTGTGCTGAGCGCTGCAACATCATGCGGCTGGTGGACCGGCGCTGGGCCGGCATCGCCAAGGGAGTGGGCACACAGAAAATCATTGGGCGTGTGCACCTGGGCTCAGAGACCCGCTTTCTGCCAGAGGCGGAGTTGCCAGAGTGTGCCAGGCTGGCCTACGGGCCAGGCCGTGAGGACACCCAGCCTGATGAGATTGCTGACCGTGAGCTGGCAGAAGCCCTGCAGAGATCTGTACAAGAGACAGatatTGAAGATGGACAAACTACCTCACCAACATCCCCTCCATTCCCCCAGCCAGTCGCCCTCcccaacagcagcagcagcaggtcaCTCCCCCCTGCTGCCGTCCCCCTCAGTGAAACCCTGGACTGCTCGACCCCGGCCCTGGCCTCCCTGCCTCCTGACTCTGCCCGCCCAGCCCAGGTGAGCCAGGACCTGTCTGAGGGGGGTTCTGagcctctctctccatcaggCCGGGGGTGGGGACCGGAGAGCCCCCCGGGCCCAGGGCTATTAGTTTCCCAGGATCCCAATCCAGAATCTGATCAGAAGCCATCGGCTCCCCAGCTGACCTCGGCTCTGGGAGCGGAGGTggcctctccctcttcctcctcctcccccagtGTGTTGCCCCGGCCTTCCTCTCCAGACACCTCAGGGTTTGGCCCTGAACTCAGTCCAGCTGCGGGGGGGGCAGTCTggtcgcccccccccccctccggTTTCCCACGAGATGCGCCCCACCCTCTATCCGCCATGGGCGCCCATCTCCCAGAAGACGTTCAGCTCGCCGACAACAACACGCTGTCCAGCATGCAGGTGGACACCAGAGCaggggaggaggcagagggagagggagagtccGAGCAGCATCCCTGTCCTCCAGGCGAGGCCGGGGGCGCAGAGGAGGCTGCAGGCGCTGAGAAGGTGCCAGGTTCacgggagagggagggagacgtGGAGGGTCCTGGCACCGCCCAGCATGACCCTGACCTTGAGCAGCACCTCCACCTTGACAGTGACCTTGACTTTGACCTGGGCACAGAGGGGGTGGGCAGAATAGCCCCTCAGTCCCTGGAAGAGAGTGCCTCCCTAGCCAGCTGCTTTGAGTGTACAGGGGGCAAGATGGGAATGGGGAGAGAGAcacccccctcttcctccccctcctcttcttctGCCTCTGCTGGGCTCCCCCCCGCCTCAGACTATGCCATTGAGACCCTGCCCCCAGAGGAGCTGATGGACACCACCCCTTCCCTTGCTGCTGCACTGCTGGAGCTGCATGAGCTCCTGCCACCGTTCTGCAgtgccctccccctccccgcCCCCTCcaccaacacccccccccaggGGAGAGGATGA

Function

GO: NA

KEGG:

id description
K11885 DDI1; DNA damage-inducible protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153524 lncRNA downstream 83759 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 123964 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 259023 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 686349 10837804 ~ 10847201 (-) False AMCG00002301
TU153380 lncRNA downstream 719674 10812186 ~ 10813876 (-) True G122319
TU153646 lncRNA upstream 60693 11601972 ~ 11628435 (-) True G122530
TU153665 lncRNA upstream 173130 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 177251 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 303113 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 305802 11847081 ~ 11848192 (-) True G122633
AMCG00002322 mRNA downstream 1535 11531278 ~ 11532015 (-) True AMCG00002322
AMCG00002317 mRNA downstream 5632 11514000 ~ 11527918 (-) True AMCG00002317
AMCG00002318 mRNA downstream 23559 11505875 ~ 11509991 (-) True AMCG00002318
AMCG00002319 mRNA downstream 28304 11484759 ~ 11505246 (-) True AMCG00002319
AMCG00002315 mRNA downstream 65851 11459063 ~ 11467699 (-) True AMCG00002315
AMCG00002320 mRNA upstream 1412 11542691 ~ 11546457 (-) True AMCG00002320
AMCG00002328 mRNA upstream 71117 11612396 ~ 11620659 (-) True AMCG00002328
AMCG00002326 mRNA upstream 87870 11629149 ~ 11630909 (-) True AMCG00002326
AMCG00002327 mRNA upstream 106632 11647911 ~ 11680183 (-) True AMCG00002327
AMCG00002333 mRNA upstream 153058 11694337 ~ 11700677 (-) True AMCG00002333
TU153575 other downstream 6195 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1680475 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1700326 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3694139 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 7313673 4214715 ~ 4219877 (-) True G120993
TU153660 other upstream 126476 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 190338 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 307191 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 330583 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 454549 11995828 ~ 12006351 (-) True AMCG00002368

Expression Profile