RNA id: AMCG00002328


Basic Information

Item Value
RNA id AMCG00002328
length 2489
RNA type mRNA
GC content 0.57
exon number 19
gene id AMCG00002328
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11612396 ~ 11620659 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGAAGGTCAGAAGGTACCTGTGTGGCTGCAGATCTCACCTATTCCTGCTCGGCCAGGTGTGTTTGCGGCTCAGACTGGTCTCAGGGGCAGGACTCCTGTTGGCTGGCGTTGCGACAGCTCTGGGCTCGGTCAGACAGACTAcgagacactgagagactgagacgcagagactgagagacacatACTGAGAGACTGTGAAGCTGAGAGACAcgctgagagacagagacacagacactgagagactggGAGTGAAAGAAAGACCAAGGGACACACAGACGCTGCCTCTGAGACAGAAGAATTGATCAAGTGTCTTCCTCACATGGAGGGGGTCTTGACCGGAGCAAGGGGAGTGGGTGATGCAGGAGCCaatcagacagagagaggggaggtgaCAGATGGTCAGAGGGCGGGGCCCCATGAGAAGCTCCTCCTCCTGCAGAAGAACTCATGTAAACCATGGCCCCGCACACGGGccaaggtcaaagGCTGTCTGGGGTGCCTGGCAAGGGTGCTATGCCGGACAGGTGTGGCACGCTGGATGTGTCTCGCAGCGCTGGGCATCCTCACCGCCCTCACCAGCTGCTTCATGGACTTCACTACCGACAGAGTGCTCAacgCTCAGCGATGGCTGATGGGCTCTGTGGGGGGTGGCGTGGGGTTGCAGTACCTGGTCTGGATCGTGTGCCCAATCGCCTTGACAACCTTCGGCACTGGATTCACACAGAGCGTCTGTCCACAGTCTGCTGgCTCAGGTGTGCCTGAGGTGAAGACGATCATGGGGGGGGTGCCACTACCAGACTACCTGACCCTCAACAACCTGATAGCCAAGATTGTGGGCATGACCTGCACCCTGGCTGCTGGGAGCCCTGTATTCCTGGGCAAACTGGGTCCTTTTGTCCATCTGTCCACTATGGTGGGGGCATTTCTGAACCGGCTGCTCAGCATCGTCTGCGAAGTGGGGGAGGAATCCTTCCACTATGAAATGCTGGTGTGTTCCGCAGCAGTGGCCATGGCAAGCTGTTTTGGGTGTCCCATCAGCGgagtgCTATTCAGTGTGGAGGTGATGTCATCCCACTTCGCTACCAAGAACTACTGTCGCTCCTTCTTCACTGCCATATGCGGGGCCATGATGTTCCGGATACTGGCAATCTGCAGCAACGAGCGTGAGACAATCCTGCCACTGCTCAGCACCTCCTTCCCTGTGGACTTCCCCTTCGACCTCCCTGAGATGGTGTTCTTTGCTGTCCTGGGgctGCTGTGTGGACTGCTGTGCGTTGTCTACCTGTTCGGCCATCGCTGGATCATCCGCTTCACcctcaaaaataaaatcctcaaGAAGCTGCTGACCACCGAGAAGACTCTGTACACGGGGCTGGTGGTGTTTGTGCTGGCAAGTATGACGTTCCCTGGCAGTGTGGGCTGGCTGATGGCCTCCAGGAACAGCTCCGAGCCCTGGCCCCCAGCACAAGTCGACGTAAAGAGGCTGTGGCTGGAGTGGACCCCTCCAGGAATCAGTGTGTTCACCACACTAGGGGTCTTCCTGTCCatgaagTTCTGGCTGCTGCTCCTGGCCTGCACAATCCCGATGCCTGCTGGGTACTTCATGCCTGTGTACCTTTACGGAGCTGCGATTGGTCGGCTGGTGGGGGAGTTCGTGGCTTTTGTGTTCCCAGAGGGGATCCAGTCCGAGGGGTCTGTTAACCCTATAAACCCTGGAGGATATGCGCTGGCTGGTGCAGCGGCGTTCTCGGGCGCAGTGACGCACACTCTTTCCCCGGGGCTGCTGGTGCTGGAGATGACCGGGCAGCTGTACCACTCCCTGCccgtgctgctggctgtgctgctgTCCAACGCTGTCTGCCGGCGCTTCTCGCCCAACTTCTACGATGGCATCATCTTGATCAAAAAACTGCCCTACTTGCCCATGGTCCTGCAGTACCACCCTGAGCTGTGTGCGGTAAAGGTCAGTCAGTTGATGAAGCGTTCAGTGACGGTGCTGGCGAGGTGTGGCAAGGCGGGGGAGGTGAGGGCGGCGCTGACCGCTGTCCAGGACAGCGAGATCCCCGTGGTGGACACCCTCGaCTCCATGATTCTGCTGGGTTCTGTGTGCCGGTCTGAGCTGATCCGCTTCTTGCAAGAGTCCACTGGATCGGGATTGGACAGAGAACTGGGGGAGGTGTGCATTATTCAGCCAACCACAGCTCAGCTCTTGTCAGAGACCACCATCAAGCAGatGAAGAAAGCAATTGAAGACCTGGCCAATGGAAAAATATCTCCACCAACATAAACTGCTTGGCCTTCTCCCCTCTCACTGTGCACCTCAATGCCTGCGTCTGACAAAGCGTACAATGCAACCTAAGCCGTAACAGCCTGCCACACCCTGCAGCTGCTTAGTAGCGCATGATGCGAGGCTCGCGTCTAAACAGCGGTTGCTTTGGACAGACAGCAGcataaaaccacaaataaacacaaacatattatAATAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K05018 CLCNKB; chloride channel Kb

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153524 lncRNA downstream 162605 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 202810 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 337869 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 765195 10837804 ~ 10847201 (-) False AMCG00002301
TU153380 lncRNA downstream 798520 10812186 ~ 10813876 (-) True G122319
TU153665 lncRNA upstream 93750 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 97871 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 223733 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 226422 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 236732 11857391 ~ 11859325 (-) True G122636
AMCG00002320 mRNA downstream 65939 11542691 ~ 11546457 (-) True AMCG00002320
AMCG00002321 mRNA downstream 71117 11533550 ~ 11541279 (-) True AMCG00002321
AMCG00002322 mRNA downstream 80381 11531278 ~ 11532015 (-) True AMCG00002322
AMCG00002317 mRNA downstream 84478 11514000 ~ 11527918 (-) True AMCG00002317
AMCG00002318 mRNA downstream 102405 11505875 ~ 11509991 (-) True AMCG00002318
AMCG00002326 mRNA upstream 8490 11629149 ~ 11630909 (-) True AMCG00002326
AMCG00002327 mRNA upstream 27252 11647911 ~ 11680183 (-) True AMCG00002327
AMCG00002333 mRNA upstream 73678 11694337 ~ 11700677 (-) True AMCG00002333
AMCG00002334 mRNA upstream 82677 11703336 ~ 11705695 (-) True AMCG00002334
AMCG00002335 mRNA upstream 87599 11708258 ~ 11711311 (-) True AMCG00002335
TU153575 other downstream 85041 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1759321 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1779172 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3772985 7836495 ~ 7839411 (-) True AMCG00002223
TU151612 other downstream 7392519 4214715 ~ 4219877 (-) True G120993
TU153660 other upstream 47096 11667755 ~ 11685089 (-) False AMCG00002327
TU153720 other upstream 110958 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 227811 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 251203 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 375169 11995828 ~ 12006351 (-) True AMCG00002368

Expression Profile