RNA id: AMCG00002329


Basic Information

Item Value
RNA id AMCG00002329
length 3105
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00002329
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11731605 ~ 11738113 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGTCAAATGGCTGAGTGCGTGCAGAGACGTGCGCGCCCCTCCCTCCTTCTGTCAGCGATGATGAGGTAGACGTCGCGAGTGCGCCTGCGCTTGCGCAGAAGCCGAGGCTCTTCCccctagtgtgtgtgtatgtgtgtgtgagagtgtgtgtccGGGGAGGCTGGAACATGGAAGATGAAGAGGTTGCTGAGAGTTGGGAAGAAGCAGCGGACAGCGGGGAGATAGACAGACGACTGGAGGAGAAGCTGAGGATCAGCCAGAAGGAGAAAAAGCCGAGCCGCTCTCCTTTGAAGACCGGCATCGTGATCCAGGACGACTCTCTCcccgctgcccccccaccacagaTCCGCATCCTAAAGCGGCCGTCCAGTAACGGCTCATTGGGCTCTCAACTGCCTTCGCAGCGGCCCCACCCTCAGGTGAAGTCGCTGGCGCAGCGCGAAGCGGAGTACGCAGAGGCCCGGAGGCGCATCCTGGGAAGCGCCAGTCCTGAAGACGAGCCAGAGAAGGCGCtgccctccaccaccaccacccctgCGCACACAGACAGGCCGGTGCGAGTGAGCATCCCCCCACCGGAGGAGTCTCGGTCGAACAACCATGTGATCCGCCAGCCAGCAGGGCCGGATGGCTCTCATGGCTTCCGCCAGCGCAGATAAACAGAGTGACGGCAGacacaaTCCTCCCCATACCCCTTCTAGCTACCCCTCCCAGGGCAGATAGACAGAGGGGGGGGGTGGCATTAGGGGTTCATCCCCATTCTGATTGACACTGTGATGAAGAGGTTTTCTCTTCAGGACTCTGCTCACTGTGACCTGACCCCTCCCTGACCTACCtaaacccccacccccacccgcTACCCCCATCACCTCGCCTGGCCCACTGTGACTGGCACCCTGACTGGGCTGGCCGGGTCACTACAGAACTGAGACCCGGTGCCCACAGacccaagagagagagacagatggggaGAATAAATTAGActgagtgaaagagagagacggTTGCATGGATGGTGGGAGGGAGTGACAGGCGGAGGGaatgtgagagagacagacaggtggaaggagtgtgtgtgactgagagagtgattgtgtgagtgtatgaTAGTGAGGGAGACTTGCTGACAGAGATGGGGGAGGTGGGGCAGGGAGAATTCTAAAATGCAAAGGAAGGGTGCCAGCTCTCCCCAGCAATAATAACTATAATGTAATTCTACTCTTGGTGACAATACTCACTGCATCTCCTCTCTGAACCAGCTTACTGCTTTATTAGTCCTGGTtgatgtctttgtgtttttggttttttgtCTTGTCAGCCATTggtcatgattttttttatttttttatttgggggtTGGGGTGGAGTGGGGGGAGGTGTCTGTTTAATGTACAGTTTCATTGCTTTATTAtacggttttgtttttattgtaatttaactTTTCCCCCTTATTTCGTTGTCAaacctgttttgtatttaagaggtttaaaaaaatgaacaaaaaaagctGGGAGAGAGGGCAGGGTGTGACCATGAGGGTGTAGCAGCCTTAAAGCAGTTTTGGAGTAGTGatcaaaacagtttttaattacaagaaataaaatgtgtatcaataaaaaaaaaattatcttcTAAATATGTACAGGCtcatacactgactgactgcctccctgactgactgactaatgGACTGACACGCTAAGGTGTGATATGTGTGTGGTTCTGCAGTGGGAGTTCATGAGTTTTGGTACAGCGGGACTGCTTGGGAGGGGGAGTATTGTATTGAACtactggactgtactgtactcttaTGGGCTGCACTGGACTGTATTGGACTGGACTCTATTGTACTACACTATTGGACTTCACTGTAGTTTaatggactggactgtatttgACTGTATTGTACATAGTCTACTATGTTAGACTGGACCGTATTGtactatattgtactgtactctactgaACTGTACATCTCTGGAGCTCAGTTTTGACAGAAGCCCACAGGattatgtgtgtctgtctgtccctctgtctgtctgtctgtgtgtgtctgtctgtcagtcactcagtcCCTCTCTGGTCCAGCCGTGCCCTCCTGGGTTTATTGGTGCAGCTGAATCTTGTCCACTGGTGCACTGTCCAATCAGCTCAACATCTGACAAATCTATACATTGGGAAAAGAACAAGAGACTAATTTAGCAATTTATAATTTGAGattccaattaagtaattaagtgaGCTGTCCTGTTGACTGTAGTGAAGTGCACTCCCTGTAGTCTGGGGGTGGGTCTTTGGGGGAACCTGGTCTGCACAGCACTGCTCTCAACACTGTGCGGATCAAGAGAGACTGAGACGAACAGACAGACACCTGTTCTGAAGGAGCTGTACAGTTTGTATAATTGGCGTCTCTGTGTTTTGCAGTTGGTCTCAGATGATCCCTGTTTAGCTGCTTCTCTCTGGATGATATCGCAGTAGAAAACCAGCctgtaaatacttttaaaatccctttaatcacaaatacacaaacaaggCTGGAGCAAGTGAACCCGCGCAGCACATGGGCCTCGTTTTGTGTTGCCTgctttggtttggtttgatATGACtttgttccttttatttttttactaataatcatgaaaataataacatcggtagaagagagagagcagtcctTTGTTATGGGGCTGCGAGGGCAGTGGGTTAGAGGGTGGGTGAGAGCAGGGTGCTTAGTGCTCCACAAAGCGACACGGTTGCAGTCCGTAATACACCGACAGACTGCCCTCTAGCTCTGATTAAAAATTGTATTCGTTACATTTTGTTAACACAGGTGTATGCAGGAATGGATTAAATAATGGAGAGGTAGGGAGAGGGAAGGTAACGCTGAACCAAAACCCAACAAGTTTCATCATTTCTCTCAGATTTGgttcctgtgtgttttttttggacTCAAGTGCTCTCTGATAGGAGCGAAGGAGTgatatgatatatatgtatatatacaggacatatgtatatatacatatatcatcgtttttgttttgttttattgtttgtctcTTTTgaaggattaaataaaaaattaaaaaagaaaatgcacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153666 lncRNA upstream 14904 11716355 ~ 11716701 (+) True G122549
TU153621 lncRNA upstream 19518 11710450 ~ 11712087 (+) False AMCG00002339
TU153607 lncRNA upstream 45287 11685432 ~ 11686318 (+) True G122501
TU153579 lncRNA upstream 187984 11543104 ~ 11543621 (+) True G122478
TU153569 lncRNA upstream 198145 11530886 ~ 11533460 (+) True G122471
TU153714 lncRNA downstream 118365 11856478 ~ 11857326 (+) True G122592
TU153790 lncRNA downstream 156515 11894628 ~ 11898683 (+) True AMCG00002355
TU153860 lncRNA downstream 273884 12011997 ~ 12016084 (+) False AMCG00002360
TU153898 lncRNA downstream 366557 12104670 ~ 12105523 (+) True G122737
TU153905 lncRNA downstream 390267 12128380 ~ 12129678 (+) True G122743
AMCG00002339 mRNA upstream 16233 11711596 ~ 11715372 (+) True AMCG00002339
AMCG00002331 mRNA upstream 37695 11688609 ~ 11693910 (+) False AMCG00002331
AMCG00002324 mRNA upstream 86821 11636813 ~ 11644784 (+) True AMCG00002324
AMCG00002325 mRNA upstream 103264 11623781 ~ 11628341 (+) True AMCG00002325
AMCG00002323 mRNA upstream 119370 11602210 ~ 11612235 (+) True AMCG00002323
AMCG00002332 mRNA downstream 211 11738324 ~ 11741047 (+) True AMCG00002332
AMCG00002330 mRNA downstream 13538 11751651 ~ 11766591 (+) True AMCG00002330
AMCG00002343 mRNA downstream 53301 11791414 ~ 11792870 (+) True AMCG00002343
AMCG00002340 mRNA downstream 55507 11793620 ~ 11797734 (+) True AMCG00002340
AMCG00002341 mRNA downstream 60171 11798284 ~ 11800507 (+) True AMCG00002341
TU153608 other upstream 37440 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 100713 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 353867 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 1137301 10567912 ~ 10594304 (+) False AMCG00002294
TU153133 other upstream 1882593 9844280 ~ 9849012 (+) False AMCG00002272
TU153704 other downstream 97326 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 395673 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1319960 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 1387265 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 5220048 16958161 ~ 16960082 (+) True AMCG00002500

Expression Profile