RNA id: AMCG00002330


Basic Information

Item Value
RNA id AMCG00002330
length 4383
RNA type mRNA
GC content 0.66
exon number 28
gene id AMCG00002330
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11751651 ~ 11766591 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGAGGAAGGCAGGTCTGGGCACTTCGTGAGACACATGGTGGAGCAGGCAAGTGGCAGGGCAGCTAGAGCTGAGCTGGAGCAGGCCCTGCGTGTGGACTCCGGGGAGAGGGAGCGAGATGCGCAGGAGTCACGCAGTCTGGCACAGCAGAATGCAGAGCTGCGCAGACggctggaggaggagcaggcCGCGTACAAGCGCAAACTCACCGCCTACCAGGAGGGGCAGCAGAGGCAGGCGCAGCTGGTGCAGAAACTGCAGGCCAAGGAAGAACAGCAGAGaAGTTCTAGTCTAGCCCAAGTGAATTCTATGCTCCGTGACCAGCTGGACCAGGCCAACACAGCCAATCAGGCTCTGAGCGAGGACATCCGCAAGCTGACAGCTGATTGGACGAAGGCTCGGGAGGAGCTGGAGCAAAGGGAGTCTGattggaggagagaggaggagtCATTCCACAGTTATTTCAGCAGTGAGCACAGTCGTCTGCTGTCTCTCTGGCGCCAGGTGGTGGGATTTCGCCGCCATGTCTGTGAAGTGAAGAGCGCCACTGAGAGAGACCTGGCGGAGGTGCGCAGTGAGCTGGCACGTGTGTCTCGGGGAGCACTGTCCTCCTGTGTCAGTCTGCGTGCCAGTGAGGGTGGGGTGGCCTTGGCGCAGGAGAGGCAGCGGGCACAGCTGGCACAGCTGGAGGAGCAGCTCAGGGCCAAGGTGGGCGAGATGCTGCAGCTTCAGGCCAGCTGTGACACAGAGAGGGCAGAGGAGCAGGATGGCGGTGCGGAGCAGGAGTTGCAGACCCTGAGAGCACAGACTGAGGCCCTGCAACAAACACTAAGAGACATTGCACAGggggagggggacagtCTGGCTGCATCTCTTGCTCCTCTACTCCGTTCCCCCTCACCCCGACGATCTGCCTCCCCCCTTCGCTCCCCCTCTCCCCGAAGGCCCCGCCTCCCTGGCCCCCCCGAGACCAGCCTCGCTGCCCTGCGCTCGGCCATCAGCAACCGGCAAGTCCTCACACAGGAGCTCCGTGGACGTATGGAGTCTGCGCAGGAGCAACTGGCAGGTGTGCGCAGGCAGCTGTCTGAtgaGAAGGCCAGTCTGGAGAGGGCAGTGCAGGCTGCGCAGGAGAAGGACAGCTCTCTCCGGGACTCCCTGGCCAAGCTGAGTGGCCTGAACGAGGCGTTGGCCCAGGACAAGACAGAGCTCAGTGCCATCATCAGCCAGctGGAGGAGGAAAAGGCTGCCCTGCTGAGCCAGAAGAGGGAGGCGGAGCAGGAGAAGCTGTCAATCAGAGACGAGCTTGTGCGATTGGAGCAGGAGAAGCTGGACCTTGACTCTGCCCGCCAGGGGCTGGACGATTCGCTGCAGGAGGTGGAGCAAAGCAGGGTGGATTTGGAGGCGGAGCTACGGGCCCAGAAGGCGGAGCGAGGACAGCTGCAGGAGAAACTGACCCAGGTGTCGCGGCAGTGCGGTGTTCTGGAGGGGGAGCTGTGCCAGGTGCGGCAGGAGGGGCAGCGGCAGGCAGAGGCGCTGGCACAAGCGGGCCGGGCTCTGGAGGAGGCAACCCGGGAGCGTGCCAGTGTGCTGGTCCAGCTCGCCGCCTCTGAGAGGGACAACCGCGCGCTCAgtGAGGTGCGGAGGCtgcggggggagggggaggcggCGCAGGCCCAGTGGGATCATGAGCGAGAGCAGCTGACCCAGGCGGTGACCAGGGCCGAGCAGGACACCCAGCTTACCCTGCGCTCTGCCCGCGATGCTCACTTGCAGGACAGCGAGAGACTGACCCGTGAGAAGGCGGAGCGGGATGAGGCGCTGAGGAGGCTGAGGCAGGAGGCAGAGGAGGCGGCGCAGAGGCAAGAGGCAGAGATGGAGGAGTTGAGGGAGGAGCTGAGCGCACTGCTGCAGGACAGAGACCAGGGCTTACTGCAGGCAGAGAGCGACAAGCAACAGCTGGAAGAGGCTCGCGGTGCGATGTCTGTGAGCGAGGAGAGCCGTGATTTGCTGCGGAGGGAGCAGCTGGAAGCGGAGCGGCGAATCAGGGAATGCCAGAGTGAGGGGGAGGGGCTGCGGCGGGAAGTGGCAGAGCTTCGGAGGGCTCTGAGTGATGTCACCAAGGAGAAAGAGACCCTGCAGACCTCCAACACTCAGCTCAGAGACACACTGAGGAGCACAGAGAGTGACAGgatcagTGTGCGCAGGCAGTGTGAGGAGAGGGAGCAGAGGCTGGCGGTGCTGGAGGAGGCACGGGCATCTGCCGAGCGGGAGGTCAGCGAGCTGCGGGCTGCCTTGAGGGAGGTCGAGAGGTCACGGCTGGAGGCGCGCAGGGAGCTGCAAGAGCTGCGCAGACAGgtgaAGCTTCTGGACAGTGAGCGGGAGCAGCGCAGTGCCGAGGTGTCAGAGCTACAGGCACGCACAGTTTTGGGGGAGCAGCGCGAGGAGGAGTCGCGGAGGGAGGTGTTCAGTCTCAAACAGAGGCTCAGCGAGGCTGAGGCAGCCAGGAACAGCGCAAAGAAAGAgGgtctgtctctgcagggccGGGTTGCGGAGCTGGAGGTGGAGTGGCGCGGGCGTGAGCGCGAGCTGCTGGGGCAACTGGAGGAGGAACGGGCCACAGAGCGGGCGCTGCAGGAGGAAGCACGGGCGCTGACCAAGCGTGCAGAGGCTGTGCAGGCAGAGCTGGCACAGCGGGGGCTGGAGCTCAGTGCCGCGGGAGGGCGGCTGGCTGGGCTGGAGGCGGAGCTGGGCAGGGCCGAGGGGCGGCGCCGCGAGCTGGAGTTCCAACTTGCCAGCCTGCACTCTGCTCTCAGCCGCACGCTGGGCATCGGAATTGGGGCTGGACGGGGGCGGGGCCGTGGCAGGAGCCCTGCCACCCACCCCCACCAGCGCAGCCTGTCCCCTCGCCGCTCGCTGTCACCCCCTAAAATTTGGGACGAGACTCAGGGCAGTCCCCAGGGCTGCAGCGAGACCCCGGAGAGGAGCCCGGGTTCAAGACCCCCCTCCCCAGAGCGCAGCGACGCCCCCCCACCCAACCTGGACCCGGAGCTGGTGCGCAGCGGCCTGAGAGACTTCGTACAGGAGCTCAGAGaaacccagagagagaggcagcaggaggaggcaGTGCGGCGTGGGGAGAGAGAGCGCAGCGCCCTGACCGACAGAGTGAGGGCGCTGGAGAGCAACCTGCACAGCACAGAGTCACAGAGACGCTTTGCACAGGAGCAGGTGAGTAAGCTGCGTGCGGGCGAGGCGCGGCTAGAGGCAGAGAGGCGCCGGCTGCGGGAGGCCCTGGAGGTGGCGGAGGCGAGGGGCACCAGGCTGGAGGTGGCACGGCGCAGCCTGGAGGGGGAGCTGCAGAGGCTGAAGTTGGGGCTGGGGGAGCGGGAGAGCGAGGTACAGGGCACACAGGGACGCATCGATGCCCTCAACACACAGGTGTCTGAGGGGGCGGAGCGGGCGGCAGCGCTGCAGAGGGAGGTGGACAGACTGACCCAGGCGCTGAGCCGAGCGCAGGAGAACGAGGCGGCGCTGACGGAGCGGGCGCACGCCCTGGCACACAGCCTGGCCCAGACTGGCGCCGAGCAGAGCGCCGCTGAGGAGCGCCTGGCCAGCCTGCAGAGGACGCTGGGCACCAGCGAGCAGGAGCGACGCCTCCTACagGAGAGGCTGGACAGTGCTCGGGCGGCGGCGGCAGAGGGGAAGCGCAACGTGGCGGCCCTCACTGAGCGCGTGCAGAGCCTGCAGGATGACATCGCCCAGAGTGAGCAAAACAGGAGGGAGCTGGAGGAACAGCTGAGCCACACACAGGagGCCCTGCGGGAGCGCGTGCAGGCAGGGGAGGAGGCACAGCGCAGTGTGGAGAGGCTGCAGGCAGAGCGGGCCCTGGGGACAGAGAGGCTACGCGGCCTGCAACGGGCGCTGGCACAGCTGGAGGGTGAGAAGAGGGAGGCGGAGAGAGCGGCAGGGAGACTGGAGAAAGACAAGAACGCACTGAGGATCACTCTGGAGAAGGTGGAGCGGGAGAGGCTGCAGTGTGAGGAAGgcagtgtgcgtctgtgtgccGAGCGGGGCAGACTGGACCGGTCTCTGTCCAGTGCCGAGCTGGAGCTGCAGGACGCCCTGCGCCAGGTCTCACTGCTGCAGgcCCAATTGGCGGAGATGGAGCAGGGTGGAGGGGTGCTGGAGGCGGCAAGGCAGCGGGAGGAGGCCCAGCGCGAGGCCGACAGGCTGAGGGCGGCACAGAGGGAGGCAGAGCGCACCCTGGAGGGCAGGGAGAGAGCACACCGGCAGAGAGTGCGAGGGCTGGAGGAGCAGGAGCTCAGGGAAATCCCCCCCACCATcatctcttctcctctccctcaccttgttattttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153666 lncRNA upstream 34950 11716355 ~ 11716701 (+) True G122549
TU153621 lncRNA upstream 39564 11710450 ~ 11712087 (+) False AMCG00002339
TU153607 lncRNA upstream 65333 11685432 ~ 11686318 (+) True G122501
TU153579 lncRNA upstream 208030 11543104 ~ 11543621 (+) True G122478
TU153569 lncRNA upstream 218191 11530886 ~ 11533460 (+) True G122471
TU153714 lncRNA downstream 89887 11856478 ~ 11857326 (+) True G122592
TU153790 lncRNA downstream 128037 11894628 ~ 11898683 (+) True AMCG00002355
TU153860 lncRNA downstream 245406 12011997 ~ 12016084 (+) False AMCG00002360
TU153898 lncRNA downstream 338079 12104670 ~ 12105523 (+) True G122737
TU153905 lncRNA downstream 361789 12128380 ~ 12129678 (+) True G122743
AMCG00002332 mRNA upstream 10604 11738324 ~ 11741047 (+) True AMCG00002332
AMCG00002329 mRNA upstream 13538 11731605 ~ 11738113 (+) True AMCG00002329
AMCG00002339 mRNA upstream 36279 11711596 ~ 11715372 (+) True AMCG00002339
AMCG00002331 mRNA upstream 57741 11688609 ~ 11693910 (+) False AMCG00002331
AMCG00002324 mRNA upstream 106867 11636813 ~ 11644784 (+) True AMCG00002324
AMCG00002343 mRNA downstream 24823 11791414 ~ 11792870 (+) True AMCG00002343
AMCG00002340 mRNA downstream 27029 11793620 ~ 11797734 (+) True AMCG00002340
AMCG00002341 mRNA downstream 31693 11798284 ~ 11800507 (+) True AMCG00002341
AMCG00002342 mRNA downstream 39107 11805698 ~ 11813640 (+) True AMCG00002342
AMCG00002344 mRNA downstream 71269 11837860 ~ 11845019 (+) True AMCG00002344
TU153608 other upstream 57486 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 120759 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 373913 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 1157347 10567912 ~ 10594304 (+) False AMCG00002294
TU153133 other upstream 1902639 9844280 ~ 9849012 (+) False AMCG00002272
TU153704 other downstream 68848 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 367195 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1291482 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 1358787 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 5191570 16958161 ~ 16960082 (+) True AMCG00002500

Expression Profile