RNA id: TU153608


Basic Information

Item Value
RNA id TU153608
length 1715
RNA type TUCP
GC content 0.48
exon number 2
gene id AMCG00002331
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11688600 ~ 11694165 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGCGCTCGGCTCGGCAGAAACTTCTGGAAAAGAcgctgagagaggagagagaaacttTCACCCACCGAGGaaatactaaacaaaattaTAGCTATATACAACTGCCAACACCACCAAACAAAGCCTTATCAAACAGGAAAATACTTGGAGTTACCCGCTTTCACCCACGAATAAGCTTTGCCCTGCAGCCTACAAACATCCgctggtttaaaataaaacttgaagggagtcattaaaaatattaacttgGTTCTTTTTGGGGAATATAATTATGGTGGAAACGAACCATATCTCAGCCtggctttatttaaaaaaacacacacggaGCTACAAACTGGCTCAGATCTGTAATCTTTACAAAGAGAATAAAACCCAGTTTACTTACACACGAATTGTGGGCTCTGGTCTGATTGGGATCTATTGAATTCACAGCTTCGTCTGCCTTGTCCCTTTTCCCTTTGTGTCTTGGAATTATCCTTGGAAGgaattaaaaaagtgaataaaatcagtggATGTATTGTTAAACCCCGATTTACATcaccttttaaaaacactgaaagaattagtaacaaaacaaagcaacttCCCGGggaattaactggattaatgtGCAGACACAATGTATGCACTAGTAATGGGAGATGTAAAAAAGCAGCTGGTATTTTTTGTCAGGAAAGAACTAcgtgtggtttaaaaaaatgatgttttCACACTGTATAAAGTGAAGGTATGGCGAAGATAAGTGATGCAGTGAGTTCAGCCTGATTGAGGAATCATAATTCAACAGCAACGCCACAGAAACAACAACTATAGCACAGCAAAGACTCAAGACTCAACTGGCACCCCTATCTTAGAGCCCCTGGACCACAAGCGTTGGAGTGTTGTCCTGGtgcagggagaggaggagggactGGGGTCTTACAGATGGCTCCTAGGAAGGAGATCAAGTACGAGGACCGGCTGGCGATCGTGTCTCTGCACCAGCAGGGCCTGTCGGGCCGGGCCATCGCACGGCAGGTCAACGTGTCGCACAACGGCGTGCAGACCACCTTGAGCCGCTACCGTCAGACAGGCAGCTGCGTCAACAAGCGGGGGCGCGGGCGCAAGAGGAAGACCAGCCGGCAGCAGGACCGGCAGATCGTGCGGCGCTGTGTGGCCGACCGTTGGCAGACCAGCACGCAACTGGCCGCCCAATTCAACGCCACCGCCGCCGTGTGCATCTCTAAGGAGACGGTGAAGCGGCGGCTGCGCGAGGCCGGGATGATGTGGACGGCGGCGGGAGGGGACAAGGGGGCGGCGACGACCAGGGCTCTGCAGAAGAGGCGCGGCGtggcaagggaggaggcagacAGAAAGTCGCGACCCTCAGACACACCTAGGAGACAGAGGACTGACACTAAGACTCACAAACTAACAGGAGTGAAAAGAAGAGGAGGGGGCTGTGATTGTGGAGACTGAGCTGAGCTTTAATGTTTACGAGAGCACTACTGCAGTACTACATCATAACATTTGTGTTATCAATTCATACTCCTCCTCACATGAATGAACACAGATCCTGCCTTAAAAACTACAGGAACAAGAGGTGTAAAATGTGGGTAAATGGCTCCGTCTGGGGACTGTGATGGGAACTGCACCCAACCTCATCGTTGTGGGATTGGTCATTCATTGATCATTAGGAAGTACTGTGAGGAGgatcaataaataaacctgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153607 lncRNA upstream 2282 11685432 ~ 11686318 (+) True G122501
TU153579 lncRNA upstream 144979 11543104 ~ 11543621 (+) True G122478
TU153569 lncRNA upstream 155140 11530886 ~ 11533460 (+) True G122471
TU153568 lncRNA upstream 160502 11525232 ~ 11528098 (+) True G122470
TU153566 lncRNA upstream 164978 11523227 ~ 11523622 (+) True G122469
TU153621 lncRNA downstream 16285 11710450 ~ 11712087 (+) False AMCG00002339
TU153666 lncRNA downstream 22190 11716355 ~ 11716701 (+) True G122549
TU153714 lncRNA downstream 162313 11856478 ~ 11857326 (+) True G122592
TU153790 lncRNA downstream 200463 11894628 ~ 11898683 (+) True AMCG00002355
TU153860 lncRNA downstream 317832 12011997 ~ 12016084 (+) False AMCG00002360
AMCG00002324 mRNA upstream 43816 11636813 ~ 11644784 (+) True AMCG00002324
AMCG00002325 mRNA upstream 60259 11623781 ~ 11628341 (+) True AMCG00002325
AMCG00002323 mRNA upstream 76365 11602210 ~ 11612235 (+) True AMCG00002323
AMCG00002316 mRNA upstream 100706 11565009 ~ 11587894 (+) True AMCG00002316
AMCG00002314 mRNA upstream 282136 11392955 ~ 11406464 (+) True AMCG00002314
AMCG00002339 mRNA downstream 17431 11711596 ~ 11715372 (+) True AMCG00002339
AMCG00002329 mRNA downstream 37440 11731605 ~ 11738113 (+) True AMCG00002329
AMCG00002332 mRNA downstream 44159 11738324 ~ 11741047 (+) True AMCG00002332
AMCG00002330 mRNA downstream 57486 11751651 ~ 11766591 (+) True AMCG00002330
AMCG00002343 mRNA downstream 97249 11791414 ~ 11792870 (+) True AMCG00002343
TU153583 other upstream 57708 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 310862 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 1094296 10567912 ~ 10594304 (+) False AMCG00002294
TU153130 other upstream 1837294 9844280 ~ 9851306 (+) False AMCG00002272
TU153133 other upstream 1839588 9844280 ~ 9849012 (+) False AMCG00002272
TU153704 other downstream 141274 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 439621 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1363908 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 1431213 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 5263996 16958161 ~ 16960082 (+) True AMCG00002500

Expression Profile