RNA id: AMCG00002333


Basic Information

Item Value
RNA id AMCG00002333
length 1776
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00002333
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11694337 ~ 11700677 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTTCCAGCGAGCTGATAGTGTTCTCGGTCTCGGCAGCGGCTCTCTGGGACAGAGGAACACTGAGGAACAGCTGCTGCACAGACACCACAGACTCCAGgggaccgagagagagagagagacagagagagagcggcaGAGCAGCGATTCTCACACCTTGTCCTCAGTAATGATGGCAGCCCAGACGCCCCAGAAGAGGATGGTGTCATCTGTGTTCATCACACTGGCGACTCCCTCCCGTGCCACGCCCCGCACACCCACTGGCACACAGCCTGGCAAACCAGTAGGCACACTGACTGGCACACAGACTGGCCAACCAGCAGGCACACTGACTGGCACACAGACTGGCCAACCAGCAGGCAAACTGACTGGCACACAGACTGGCCAACCAGTAGGCACACTGACTGGCACACAGACTGGCCAACCAGCAGGCACACTGACTGGCACACAGACTGGCCAACCAGCAGGCACACTGACTGGCACACAGACGGGCAAACAAGCAGGCACACTGACTGGCATCAATTCCAAGTACACCAGACTCAATGCCACCACGCCCTCCAGCCCTGGTGCAGTGCCCCAGCCTCCCCCCATCACCACTGGCCTCACCAGGAAActaccacccccacccccctctgcCAATGGACAGCCAACAGCAGGAGATAACTGCACTGATGACCTGccacccccgccccctcctGAGGAAGCAACCCTGACCCAGCACTCCACACCACCCCCGCCCCCGCCTTCCCTGTACACCCCAGTGCCTCCTGTCTCCAGCGCAGAGATGCTGCACAGTCCACCGGCCCCCCAACTGCAGGGTGGTGTGGTCGGGAGTCAGCATGGACAGGGAGCTCCCCCTGGTGGTGACAAGCAGGTGTTGCAAGGCCAGCAGCACATCCAATCAGAACTGCTGGACTGTGAGAGCAAAgAGCTCTGTGGTTTTTGCCGTAAGTCAGTGCCGCTTGCTTCCCCAGCGATCGAGGCGATGAACAGGACGTACCACCCTGCCTGCTTCCTGTGCCGCCAATGTCGCCACCCGCTGGCTGGGGAGCTGTACTACAACAAGGCCGGGACCCCACTGGCCCTGGACAAGGCCTTCCACCCTGCTTGCTTCACCTGTGTTGTGTGCAGCCAGCCAATCGGAGCCGAGCGATTCGCAGTGGACGACAACAACGAACTTCACTGCTTGCTTGACTACTACAGgagGTTTGCATCtcgctgctgtgtgtgtgaacagctgATCATCCCAGCACCGGATGGCCGGGACTTGTACACTGTGGAGTGTCTGGGCCGCAGCTTCCATGAGGCCTGCTACTGCTGCCAGgtGTGTGGCGTGCAATTGTCTCCGGAGCCGACTGATCAGGGCTGCTTCCCCCTGGACGACCGCATCCTCTGCAAGCCCTGCCACATCAACCTGGCCCAGCAGAGCACCCCCTGACCCCTGTGTGACCCCACTTGTGACCTGACCCCTGTACGACCTCTCCCTGACCTGACAGCCACACTCCAGTACCCCCACTGCACTGCcctttgacctctgacccctccGCCCCTGACCTTCTTCTTGGgctttgctattattattttttatttctcagatttataattaataaggGACCACTGAATGTTCTCAGTCATTGGAGCACCTGGGTGTTTTATTGTAACTGaccttttttatattgtatacatatccttctctctctgtctgtttgtttctcatctttatttattctcattaatcaataaaatattttcaaacacacactTGGTTCTGTGTCTT

Function

GO: NA

KEGG:

id description
K24416 FBLIM1, FBLP1; filamin-binding LIM protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153646 lncRNA downstream 65902 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 244546 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 284751 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 419810 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 847136 10837804 ~ 10847201 (-) False AMCG00002301
TU153665 lncRNA upstream 13732 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 17853 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 143715 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 146404 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 156714 11857391 ~ 11859325 (-) True G122636
AMCG00002327 mRNA downstream 14154 11647911 ~ 11680183 (-) True AMCG00002327
AMCG00002326 mRNA downstream 63428 11629149 ~ 11630909 (-) True AMCG00002326
AMCG00002328 mRNA downstream 73678 11612396 ~ 11620659 (-) True AMCG00002328
AMCG00002320 mRNA downstream 147880 11542691 ~ 11546457 (-) True AMCG00002320
AMCG00002321 mRNA downstream 153058 11533550 ~ 11541279 (-) True AMCG00002321
AMCG00002334 mRNA upstream 2659 11703336 ~ 11705695 (-) True AMCG00002334
AMCG00002335 mRNA upstream 7581 11708258 ~ 11711311 (-) True AMCG00002335
AMCG00002336 mRNA upstream 19539 11720216 ~ 11725951 (-) True AMCG00002336
AMCG00002338 mRNA upstream 66607 11767284 ~ 11772145 (-) True AMCG00002338
AMCG00002337 mRNA upstream 72919 11773596 ~ 11783638 (-) True AMCG00002337
TU153660 other downstream 9248 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 166982 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1841262 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1861113 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3854926 7836495 ~ 7839411 (-) True AMCG00002223
TU153720 other upstream 30940 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 147793 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 171185 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 295151 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1327520 13028197 ~ 13029406 (-) False G122862

Expression Profile