RNA id: AMCG00002334


Basic Information

Item Value
RNA id AMCG00002334
length 927
RNA type mRNA
GC content 0.69
exon number 5
gene id AMCG00002334
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11703336 ~ 11705695 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTCCTTCCTGCGCTCCTGGCTGCCCGGGGTCCCCGGCTTGTGGCCGCTCTCTGCAAACCCGCTGGACTGTCTGCTGCAAGgGCTGGTGGCGTCCTGTGGGATCTCCGTGCTGTGCAACCTGATGAGGATCCATCTtgcgGTGCGCGGCGGGCTGCGGGGGGGCGGGCTGCTGGACTGGGCTGTGCTGTGGGTGCTGACTGGGCTGCTGGCGCTGGTGGGCCCACGGGTTGCTGCCCTGCTGGTGCTGGAGTTCTCCCTCAGGGCCGTCTCCGCCCGAGTCGCTGGGCAGCAGGGTCCTGGGGGGCAGCTCCTGGTTCAGTGCCAGTTCTCGCTGGGCTGCGCGCTGACCTGCAGCCTGAGCTTCCTGCAGGAGGGGGCGGCGCAGCGGACCCTGGGGCTGGTGTTGGCAGCGGGGCTGGCGGGACTGCTGTCCTGGTGTGCACAGTCGGCCTGGCGCCACGTGGGGGTACTGTACCCCCTGCACAGCTCCCAGCGCTACTGCGGGCTGTGCCTGACCCTGCTGTCCCACGGCTGCTCCCTGCCCCGCCTGCTGCGCCGGGCCCTGAGCCTCTGCTTCCTGGTGGCCGACATCGCTGCAGTCGCCCTCGTCAACCGCGACTTCCTGTCCACCGGAGACGCCCTGCGCTTCTGGACGCCCCTCACCATCTGCTACACCCTGCTGGTGGTGTACATGCAGGaggagcagcagcagcggcccgGAGAGGGGGTGGTTTTCCGTACAGCAGGGGTGCGTCTGGGGGGACTGCTGGTGCTGATGCTGACCGTGGGCCGCTGGACAGACGTGCTGGACATCGGTGTGTGCCTGCTGGGCGAGGCCTGCTGCCTGCTGACCGCTGGGGACATGCTGTCTGCTCTCCGTGCACAGGTCAGAGGGGTCAGCGAGAGGGCAGAGGGCACGTAG

Function

GO:

id name namespace
GO:1902652 secondary alcohol metabolic process biological_process
GO:0008203 cholesterol metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153646 lncRNA downstream 74901 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 253545 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 293750 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 428809 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 856135 10837804 ~ 10847201 (-) False AMCG00002301
TU153665 lncRNA upstream 8714 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 12835 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 138697 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 141386 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 151696 11857391 ~ 11859325 (-) True G122636
AMCG00002333 mRNA downstream 2659 11694337 ~ 11700677 (-) True AMCG00002333
AMCG00002327 mRNA downstream 23153 11647911 ~ 11680183 (-) True AMCG00002327
AMCG00002326 mRNA downstream 72427 11629149 ~ 11630909 (-) True AMCG00002326
AMCG00002328 mRNA downstream 82677 11612396 ~ 11620659 (-) True AMCG00002328
AMCG00002320 mRNA downstream 156879 11542691 ~ 11546457 (-) True AMCG00002320
AMCG00002335 mRNA upstream 2563 11708258 ~ 11711311 (-) True AMCG00002335
AMCG00002336 mRNA upstream 14521 11720216 ~ 11725951 (-) True AMCG00002336
AMCG00002338 mRNA upstream 61589 11767284 ~ 11772145 (-) True AMCG00002338
AMCG00002337 mRNA upstream 67901 11773596 ~ 11783638 (-) True AMCG00002337
AMCG00002348 mRNA upstream 81807 11787502 ~ 11790736 (-) True AMCG00002348
TU153660 other downstream 18247 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 175981 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1850261 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1870112 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3863925 7836495 ~ 7839411 (-) True AMCG00002223
TU153720 other upstream 25922 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 142775 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 166167 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 290133 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1322502 13028197 ~ 13029406 (-) False G122862

Expression Profile