RNA id: AMCG00002335


Basic Information

Item Value
RNA id AMCG00002335
length 774
RNA type mRNA
GC content 0.66
exon number 5
gene id AMCG00002335
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11708258 ~ 11711311 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTGGCCCCCCCTGGACTTCGTCCTAGGCGCGGGGGCGTGCTGTGGGGCCTGCCTGTTCACCAACCCCCTAGAGGTGGTAAAGACACGGCTGCAGCTGCAGGGGGAGCTGCGCGCTCGGGGCTCGTACCCTCGGCAGTATCGTGGCGTGCTGCAGGCGATCGGGGCCGTGGCACGGGCTGACGGCCTCCTGGGGCTGCAGAAGGGGCTGACAGCTGGCCTGCTGTACCAGGGAGTGATGAACGGCGTCAGGCTGGGCTGCTACTCCTACGCCCAGGCTGCAGGCCTGACTGGGCTACAGGGGGGAAGCCTGCTGGCAGGCGCTGTGGCCGGGGCCTTAGGTGCCTTTGTGGCCAGTCCTGCCTACCTGGTAAAGACTCACCTGCAGGCTCAGAGTGTAGCGGCCATCGTCGTGGGACACCAGCACAACCACCAGggaGTGTCCAGTGCTCTGGGCAGTATATACCGCAGTGGGGGGGTACTGGCCTTGTGGCGGGGCGTGAGTGGCGCCGTGCCCCGGGTCATGGTGGGCTCAGCTGCCCAGCTCGCCACCTTCAGTGCTGCCAAGGACTGGGTCACCTGCCACCAGTGGTTCATTCCGGACAGCTGGTTGGTTGCCCTGACTGCAGCTATGATCAGCAAGGGGCCACTGGGCCTATACAAGGGCCTGGGCCCAGCCTTCTTGCGGCTGGGCCCCCACACTGTACTCAGCATGCTGTTCTGGGACCTGCTGCGCCAGCGAGCTTTTTTATATCAGTGTGGTGAGGGGCAGAGC

Function

GO: NA

KEGG:

id description
K15117 SLC25A34_35, OAC1; solute carrier family 25, member 34/35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153646 lncRNA downstream 79823 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 258467 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 298672 11407524 ~ 11409586 (-) True G122432
TU153446 lncRNA downstream 433731 11267564 ~ 11274527 (-) True G122376
TU153396 lncRNA downstream 861057 10837804 ~ 10847201 (-) False AMCG00002301
TU153665 lncRNA upstream 3098 11714409 ~ 11716145 (-) True G122548
TU153668 lncRNA upstream 7219 11718530 ~ 11718969 (-) True G122551
TU153761 lncRNA upstream 133081 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 135770 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 146080 11857391 ~ 11859325 (-) True G122636
AMCG00002334 mRNA downstream 2563 11703336 ~ 11705695 (-) True AMCG00002334
AMCG00002333 mRNA downstream 7581 11694337 ~ 11700677 (-) True AMCG00002333
AMCG00002327 mRNA downstream 28075 11647911 ~ 11680183 (-) True AMCG00002327
AMCG00002326 mRNA downstream 77349 11629149 ~ 11630909 (-) True AMCG00002326
AMCG00002328 mRNA downstream 87599 11612396 ~ 11620659 (-) True AMCG00002328
AMCG00002336 mRNA upstream 8905 11720216 ~ 11725951 (-) True AMCG00002336
AMCG00002338 mRNA upstream 55973 11767284 ~ 11772145 (-) True AMCG00002338
AMCG00002337 mRNA upstream 62285 11773596 ~ 11783638 (-) True AMCG00002337
AMCG00002348 mRNA upstream 76191 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002346 mRNA upstream 89130 11800441 ~ 11803744 (-) True AMCG00002346
TU153660 other downstream 23169 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 180903 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1855183 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1875034 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3868847 7836495 ~ 7839411 (-) True AMCG00002223
TU153720 other upstream 20306 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 137159 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 160551 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 284517 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1316886 13028197 ~ 13029406 (-) False G122862

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040847 True 3016 mRNA 0.44 2 NC_007133.7 184670 ~ 188112 (-)