RNA id: AMCG00002336


Basic Information

Item Value
RNA id AMCG00002336
length 1205
RNA type mRNA
GC content 0.62
exon number 7
gene id AMCG00002336
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11720216 ~ 11725951 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCTGCCATGGCTGCCTCATCTGACAGTGAAGATGACAGTTTTGTTGCCATGGACACAGAGGAGGGGACGGCAGTTGGCATGGtgatgggggcgggggggggcagCATGGAGCAGGACGAGGAGCCGGCGCACGGGGTGGAGGCCGAGACGGAAGCAGAGGGAGTGGCCGAGGGAGACGGCGAGACAGAGGGGGAAcagggcacagagagagacaggggtaGACCGCACCCCCACGTGGTGGAGAGGGCCATGGGCGAGCTGCCGGAGGAGGTGCTGGAGTATATCCTGTCCTTCCTGTCACCCTACCAGGAGCACAAGACCGCCGCCCTTGTCTGCAAGCAGTGGTACCGCCTCATCAAGGgtgTGGCTCATCAGTGTTACCATGGTTTCCTGAGGGCGGTGCAGGAGGGCAATATCCAGTGGGAGAGCCGGACGTACCCCTACCCCGGCACCCCCATCACACAGCGCTTCTCCCACAgtgCGTGTTACTATGACAGTAACCAGTCCATGTATGTGTTCGGGGGCTGCACTCAGAGCAGCTGTAACGCTGCTTTCAATGACCTCTGGAGACTCGACCTCAACAGCAAGGAGTGGATCCGCCCACTGGCCTCAGGCTCATACCCCTCCCCGAAGGCGGGCGCGACCCTGGTGGTGTACAGGGACCTGCTGGTGCTGTTTGGGGGCTGGACTCGACCCAGCCCGTACCCCCTGCACCAGCCTGAGCGGTTCTTCGACGAGATCCATACCTACTCCCCCTCCAAGAACTGGTGGAACTGTATTGTTACGACGCATGGTCCCCCCCCAATGGCAGGACACTCTTCCTCTGTGATTGGCGGCAGGATGGTCGTGTTCGGGGGGTCACTGGGGTCACGGCAGATgaGTAATGAGGTCTGGGTTCTGGACCTGGAGCAGTGGTCGTGGTCCAAGCCACCCATTGCTGGCCCCTCCCCCCATCCCCGTGGAGGCCAGTCTCAGGATGCATGGCTGCTGCACATGGGCCCCCCCCCCTGGACGTGGCAGCAGTTACGTGTGGAGAACGAGGAGCACGGCGCCCCGGAGCTGTGGTGTCACCCCGCCTGCCGGGTACAAGCCGCACCTTGCCTCTCCCAATCTCTCCCTgcccctttccctctctctttctctccctcagtcTTGCTCACTCACaccctgaccccccccccccttctcactctttatgttttt

Function

GO: NA

KEGG:

id description
K10317 FBXO42; F-box protein 42

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153668 lncRNA downstream 1247 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 4071 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 91781 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 270425 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 310630 11407524 ~ 11409586 (-) True G122432
TU153761 lncRNA upstream 118441 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 121130 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 131440 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 136952 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 143656 11869607 ~ 11871379 (-) True AMCG00002351
AMCG00002335 mRNA downstream 8905 11708258 ~ 11711311 (-) True AMCG00002335
AMCG00002334 mRNA downstream 14521 11703336 ~ 11705695 (-) True AMCG00002334
AMCG00002333 mRNA downstream 19539 11694337 ~ 11700677 (-) True AMCG00002333
AMCG00002327 mRNA downstream 40033 11647911 ~ 11680183 (-) True AMCG00002327
AMCG00002326 mRNA downstream 89307 11629149 ~ 11630909 (-) True AMCG00002326
AMCG00002338 mRNA upstream 41333 11767284 ~ 11772145 (-) True AMCG00002338
AMCG00002337 mRNA upstream 47645 11773596 ~ 11783638 (-) True AMCG00002337
AMCG00002348 mRNA upstream 61551 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002346 mRNA upstream 74490 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002352 mRNA upstream 78103 11804054 ~ 11805639 (-) True AMCG00002352
TU153660 other downstream 35127 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 192861 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1867141 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1886992 9831911 ~ 9833224 (-) True AMCG00002276
TU152605 other downstream 3880805 7836495 ~ 7839411 (-) True AMCG00002223
TU153720 other upstream 5666 11731617 ~ 11734324 (-) True G122597
TU153763 other upstream 122519 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 145911 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 269877 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1302246 13028197 ~ 13029406 (-) False G122862

Expression Profile