RNA id: AMCG00002337


Basic Information

Item Value
RNA id AMCG00002337
length 2817
RNA type mRNA
GC content 0.62
exon number 25
gene id AMCG00002337
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11773596 ~ 11783638 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGACTTGGGGGAGGCTGTGAGCAGCTGTGTCCGGGAGCTGATGTTTGACAGCACCGGTGACGgcgacagtgacagtgacagtgcgGTGCCGTGGCGTGTGGCCTTGACCTATGTTGGGGCTGTGTTGAGCGCCgggctcctgctgctgctgttccaTTGGTACCCCCGTCTGGCACTGCGCATCCGCTGCCAGCCCTGCCCACTGGGGCTCGCCACCCTGCTGCTGGTCACTgaCAGCCATGGTCAGCAGTCAATAGTAGAGGTCATGacagaggaggtggaggagggaaGCCTGGAGCAGACTGGGGCAGAGGAGGATGAGTGGAGAGACACTGTGCAACTGCACACAGAGGAGagGAGTGTGCTGCGGTTCTATGTGTTCGAGGGCCAGCGCTATGTGTGGTTGTCCAGGAAGGGGGCCTTCTGCCCAGTCAGtgttCTGAACGAGGGGTGGACATGTGCGGAGTTGCATGGCCGGAGGGGGGGCCTGAGCCACGAGGAGCAGAGCGCCAAgaggaCACTGTATGGACAGAACCTAATTGATGTGCCAGTGAAGTCCTACATGAggctgctgctggaggaggTGCTGAACCCATTCTATGTGTTCCAGCTGTTCAGTGTGGTGCTGTGGCTATTTGATCACTATTATTACTATGCTGGCTGCATCCTGCTCATCTCACTGGCCTCCATCGCCCTCACTCTGTACGAGACACGCAAGGAGGTGCTGAGCTCGGAGCAGCTGGTCCCTGGGGACTGTGTGCTGCTGCCCCCTGACGGGCTGCTGCTGCCCTGCGATGCTGTCCTGTTGGAGGGGGAGTGCATGGTCAATGAGAGCATGCTGACAGGGGAGAGTGTTCCAGTGATGAAGACGGCGGTGACAAGGGGGGAGCAGCAGTACTGCCCTGATGCTCACCGTCGCCACACGCTGTTCTGCGGCACTCAGCTCATCCAGACCAAGGGGCGGGGAATCGTCATTGTCACCCGCACAGgtttCTGCACAGCAAAGGGAGACCTGGTCAGCTCCATCCTGCACCCCCAGCCAATCAGCTTCCGCTTCTACAGTGATGCCATGAAGTTCCTCATCGTCCTGGGAGTGCTAGCTCTGATTGGGACTGTCTACAGTGTGGTGATCCTCGTGCAATCCAATGTAACGGTGATGGAGCTGGTGGTCCGCTCCTTGGACATTGTGACCATCATTGTCCCCCCCGCACTGCCCGCTGCCTTGACGACGGGCATGCTGTACGCACAAAGCCGGCTGAAGCAGCACGGGGTGTTCTGTGTCAGCCCCCCCCGCATCACTGTAAGCGGCAAGGCTAGCGTGATCTGCTTCGACAAGacgGGTACTCTGACTGAGGAGGGTCTGGACGTGTGGGGGGTGTTGCCCAGGGATGGGGGAGGGTTTGGGGAACTGGTCCCAGACCCCCGGCTGCTGCCCCCAGGCCCCCTCCTCTGGGTAATGGCCAGTTGCCACTCTGTGTGCCTGCTGGGGGGGCAGCCCCTGGGCGACCCCCTTGATCTCAAGATGATTGAGTCCACAGGCTGGGAGCTGGTGGAGTCGGCAGGGGAGGGTGAGCCCGGGACGGACCTGACCATGATGAAGCCCCCTGCCTTCGAGCAGCAGCCCCAGGGAATCatGCTCAGTGAGCCCCTGCTGATAGTGCGCAGGTTTCCCTTCTCCTCGGCCCTCCAGAGGATGAGTGTGGTAGTGCGTCCAAAAGGGGGGCACGGTGCCCAGACCCTGCTCAAGGGGGCTCCAGAGACTGTGGCCAGCCTGGTGCTAGCGCTGGCACACCGGCCACTGGAGCTCAGTGACTCCGAGCTGCAGGTCATGGAAAGGGAGGCAGTGGAGAGTGAGCTGCAGTTCCTCGGCTTCCTGGTGATGCGGAACCTGCTGAAGCCGGAGACGGCACCAGTCATTACCACCCTGCGCTCTGCCTGCCTGCGCACTGTCATGGCAACAGGTGACAACATCCTGACTGCGGTGAACGTGGCGAGGGGGTGTGGGATGGTGGGGGGTGGTGAGAGGGTAATCTTTGTCCATGCCACTCCCCCGCTAGGCCCCACTCCCCCCATACTCCGATTCGTGCTGGAGTCCGAGGATGGCGCccaggggggcactgaggcacTGCCGCAGGGGCTGTACCAGCAGGGGGGTGGGAGCTACCATCTGGCCCTGACTGGGGATCACAGGGTTCTGATGTGTGGAGACGGGGCCAATGACTGTGGGGCTTTGCGGGCAGCAGATGTGGGCGTGTCCCTGTCGGAGGCGGATGAGGGTCGCTGTTCTCTGGTGACGTCATTCGCTCTGTTTAAGTACATGGCTCTGTACAGCATCATCCAGTACAGCTCCGTCCTCATCCTGTACACTgtaAAGACTAACCTGAGTGACCTGCAGTTCCTGCTGATTGACCTGGGGATAGTGACGTCCCTGGCGATAGTGATGGGGCGGGGTGGCCCTGCGCAGACGCTGACGCCTGCCCGCCCCCCCGCCCGCCTGCTGTCTATGACTGTGCTGGGAAGCCTTTTCCTGCACaccgtcctcctcctcctcacacaGACCAGCGCCCTGCTCATCACACAGGCACAGGACTgGTTCGTGCCCCTCAATGCCACGGTGGTGGTGGGTGCGGGGAACCTGCCCAATGCAGAGAACACTGCGCTGTTCAGCGTGTCGGGGCTGCAGTACCTCACCATGGCCGCTTCCAAGAAGCTGTACAAGAGGCTGGACCTGTCCTTGAGAGAGCAGCCTGACTGGCCCCCCCTGGACCAGCCCCTCCTCACCCCCCCCGGCACCACCATCAACCTCAGCTAG

Function

GO: NA

KEGG:

id description
K13526 ATP13A2; cation-transporting P-type ATPase 13A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153668 lncRNA downstream 54627 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 57451 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 145161 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 323805 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 364010 11407524 ~ 11409586 (-) True G122432
TU153761 lncRNA upstream 60754 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 63443 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 73753 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 79265 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 85969 11869607 ~ 11871379 (-) True AMCG00002351
AMCG00002338 mRNA downstream 1451 11767284 ~ 11772145 (-) True AMCG00002338
AMCG00002336 mRNA downstream 47645 11720216 ~ 11725951 (-) True AMCG00002336
AMCG00002335 mRNA downstream 62285 11708258 ~ 11711311 (-) True AMCG00002335
AMCG00002334 mRNA downstream 67901 11703336 ~ 11705695 (-) True AMCG00002334
AMCG00002333 mRNA downstream 72919 11694337 ~ 11700677 (-) True AMCG00002333
AMCG00002348 mRNA upstream 3864 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002346 mRNA upstream 16803 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002352 mRNA upstream 20416 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002347 mRNA upstream 31689 11815327 ~ 11821431 (-) True AMCG00002347
AMCG00002349 mRNA upstream 46834 11830472 ~ 11833823 (-) True AMCG00002349
TU153720 other downstream 39272 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 88507 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 246241 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1920521 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1940372 9831911 ~ 9833224 (-) True AMCG00002276
TU153763 other upstream 64832 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 88224 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 212190 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1244559 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1244559 13028197 ~ 13029406 (-) True G122862

Expression Profile