RNA id: AMCG00002338


Basic Information

Item Value
RNA id AMCG00002338
length 1097
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00002338
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11767284 ~ 11772145 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTCGCCCGCTCGGCGCCTCAGACACAGCGGACAGAGACCGGCGGACTGACCGACTGAAAGCGTTCCAGTATTCTTCTACCTCCAGAGTTGCAGAGTGAAGATGAGAGCCAGCAGCCTGCTCCTGCTCTGCCTGCCTGCCCTCCTACTGGCTCAGCAGCAGTATGAACACACAGATGAGTTCTACCCGAAGCAGTACAACCAATACAACCCCGTGGGTGAGAGAGCTGTCCCACCGCTCCATCCCCTTCGGAGAGTGTACGTTGTGAATAAGGAGGTGTGTGTCCGCACGGTGTGTGCCCACGAGGAACTGCTCCGAGCTGACCTGTGCCGTGACCAGTTCTCCAGGTGTGGGGTGCTGGCAGTGAGTGggcagtgtggcagtgtgagcTCATCCTGTGTGAAGAGCTGTGGGGGCTGTTAGACTGGAGCTGAGCCAGAGAGACCCTTGCACTCAGGACCACCCTTTCCCCTCGCACCTGGGACCCTCCATATCTCCCCTCTcattcccctcctctctccccctctccctctctctcagtttcCAATTCAACACAAACTTTATTGGCGTGACTGAgtgacatcagtgttgccaaagcactgACAGACAGGCCCTGTGCTCAGGAACAGGGCAATGGGGAACAATACATACAGTagatatatattagaaaattaACAGGCATAGTTACACAAGTGATATTTAGATATAAGTGTTGTGtacacagtatacacagtgCTCTCTCCCCCTGTGTGTTCTTCAGAATGAACCTggttattgtactgtattgtatagtaCTGTATTCACATACCTGCATGGTGCTACAACCTAAGACCCCACCCCTTTCCTGACCCCACCCTCATCATTCTCCTGGACCAATCCCTGTTCCTCTGTTGATAAAATAACTCCTCCCACTCCATGTCACAATCGTATCCATGACTCACCTCCCTTAAACCCGAAATGCCATGCAAAGGGTTACACCTGTATTTGCATGGCCCCACCCATCGATCACATGACCACGCCCCACCCCCATCGGTGTGTCCGTATCTCAGTGTGGGCTATCTctctccctatatatatatatatatttatatatatata

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153668 lncRNA downstream 48315 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 51139 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 138849 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 317493 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 357698 11407524 ~ 11409586 (-) True G122432
TU153761 lncRNA upstream 72247 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 74936 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 85246 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 90758 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 97462 11869607 ~ 11871379 (-) True AMCG00002351
AMCG00002336 mRNA downstream 41333 11720216 ~ 11725951 (-) True AMCG00002336
AMCG00002335 mRNA downstream 55973 11708258 ~ 11711311 (-) True AMCG00002335
AMCG00002334 mRNA downstream 61589 11703336 ~ 11705695 (-) True AMCG00002334
AMCG00002333 mRNA downstream 66607 11694337 ~ 11700677 (-) True AMCG00002333
AMCG00002327 mRNA downstream 87101 11647911 ~ 11680183 (-) True AMCG00002327
AMCG00002337 mRNA upstream 1451 11773596 ~ 11783638 (-) True AMCG00002337
AMCG00002348 mRNA upstream 15357 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002346 mRNA upstream 28296 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002352 mRNA upstream 31909 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002347 mRNA upstream 43182 11815327 ~ 11821431 (-) True AMCG00002347
TU153720 other downstream 32960 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 82195 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 239929 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1914209 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1934060 9831911 ~ 9833224 (-) True AMCG00002276
TU153763 other upstream 76325 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 99717 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 223683 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1256052 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1256052 13028197 ~ 13029406 (-) True G122862

Expression Profile