RNA id: AMCG00002342


Basic Information

Item Value
RNA id AMCG00002342
length 1845
RNA type mRNA
GC content 0.61
exon number 15
gene id AMCG00002342
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11805698 ~ 11813640 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCACAGTACGGAAGCATGAGGTCAACAGGTTGGCCAGAGACAGGTTGACCAGGATCAGGAAATGGGCCTATGTAGTGTCAGCCAATCAGGATGGCGAATCCTGTGCGAGGGGCGGCTCTGCCTTCTCCGAGAGGCGGCTGCGCAGAGGACTTTTGAGTGACACGCGTGTTTCTGTAGTGTGGGAGCCGCTCTGTCCGCCTGGACTCCTGGACAGCCAGAACCGTGCTGACCCATCCAACCGCCACACCATGTCCTGGCTATTCGGTCTGAATAAAGGGCAGCCCAGCCCGCCCCCGGACCTGCCGGTACCTCCTCCCCCCCCGCCACCGGCCGGGGGATCCGGAGGGAGCGGGGGGGATAAACCCAAGGACAAATGGAGCAATTTCGACCCCACCGGACTGGAGCGGGCGGCCCGAGCGGCCCGGGAGCTGGACCAGTCCCGCCATGCAAAGGAGGCCTTGGACCTGGCCCGTCTGCAGGAGCAGACTGTGCAGCTGGAGCACCAGGGCAAGCTGAAGGAGTATGAGGCAGCGCTGGAGCAGCTGAAGGGAGAACAGATACGCATCCAGGGGGAGGAGAGACGGAAAACAATTGCAGAAGAGAGCAGACAGCACCAAGCTaGGGCACAGTACCAGGACAAGCTGGCCAGGCAGCGATATGAGGAGCAGCTGAGACAACAGGTGAGGGCAGGGGAGGGAATCTctgtgtgtctgtacacAGCAACGATCGAGCATGAGATGGAGCTGCGCCAGCGGGGGGAGCTGCAGCGCGTGGAGGCAGAGGCGCGAGCACGGGGCCGCGTGGAGCGGGAGAATGCCGACATCAACCGAGAAAACATCCGCCTACGCGCTGCtgagcacagacagacagtactGGAGTCCATACGgacgGCGGGGGCGGTGTTTGGAGAGGGGTTCCGTGCCTTTGTGTCAGACTGGGATAAAGTCACAGCCACGGTGGCTGGGCTGACATTGCTGGCAGTGGGAGTGTACTCTGCACGGAATGCAACGTCGGTGGCAGGGCGCTATATCGAAGCACGGCTGGGCAAGCCTTCCCTGGTGCGCGAGACGTCACGCATCACTGTGGCGGAGGCCATCAAGCACCCAGTCAAGgtGGGCAGGCGTCTGGCCAGTAAACCTCAGGATGCTCTGGAGGGGGTGGTGCTCAGTCCGGTACTGGAGGAGCGTGTGCGGGACATTGCCATAGCCACGCGGAACACCCGTCAGAACCACGGGCTGTACCGGAACATCCTGATACTCCTGCTGTTTGTAGATGAAGCTGATGCATTCCTACGCAAGAGATCCACGGAGAAAATCAGTGAGGATCTTCGAGCCACTCTCAATGCATTCCTGTACAGAACTGGAGAGCAGAGCAACAAgtTCATGCTGGTCCTGGCCAGTAATCAGCCTGAGCAGTTCGACTGGGCAATCAATGACCGCATTGATGAGATCGTCAACTTCGCCCTGCCGGGGCCAGATGAGCGCGAGCGGCTGGTCAGGCTCTACTTTGACCGCTACGTCTTGCAGCCAGCAGCACAGGGCAAACAGCGGCTGAAGGTGGCGCAGTTCGACTATGGCAAGAAGTGCTCAGAGATTGCTCAGCTGACCGAGGGCATGTCCGGCCGTGAGATCTCCAAACTGGGCGTGGCCTGGCAGGCGGCTGCGTACTCCTCGGAGGATGGAGTTCTGTCTGAGGCGATGATTGACGCGCGTGTTTCTGATGCCGTCCGTCAGCACCAGCAGAAGATGGACTGGCTGCAGAGGGAGCGTGTTATGGGGGGCGGTGAGGCTGGAGGCAAGCCTGGCTTCACCCCCCCGCTGCCAGAGGGAACCCTAGTCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K17681 ATAD3A_B; ATPase family AAA domain-containing protein 3A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153666 lncRNA upstream 88997 11716355 ~ 11716701 (+) True G122549
TU153621 lncRNA upstream 93611 11710450 ~ 11712087 (+) False AMCG00002339
TU153607 lncRNA upstream 119380 11685432 ~ 11686318 (+) True G122501
TU153579 lncRNA upstream 262077 11543104 ~ 11543621 (+) True G122478
TU153569 lncRNA upstream 272238 11530886 ~ 11533460 (+) True G122471
TU153714 lncRNA downstream 42838 11856478 ~ 11857326 (+) True G122592
TU153790 lncRNA downstream 80988 11894628 ~ 11898683 (+) True AMCG00002355
TU153860 lncRNA downstream 198357 12011997 ~ 12016084 (+) False AMCG00002360
TU153898 lncRNA downstream 291030 12104670 ~ 12105523 (+) True G122737
TU153905 lncRNA downstream 314740 12128380 ~ 12129678 (+) True G122743
AMCG00002341 mRNA upstream 5191 11798284 ~ 11800507 (+) True AMCG00002341
AMCG00002340 mRNA upstream 7964 11793620 ~ 11797734 (+) True AMCG00002340
AMCG00002343 mRNA upstream 12828 11791414 ~ 11792870 (+) True AMCG00002343
AMCG00002330 mRNA upstream 39107 11751651 ~ 11766591 (+) True AMCG00002330
AMCG00002332 mRNA upstream 64651 11738324 ~ 11741047 (+) True AMCG00002332
AMCG00002344 mRNA downstream 24220 11837860 ~ 11845019 (+) True AMCG00002344
AMCG00002355 mRNA downstream 80833 11894473 ~ 11898701 (+) False AMCG00002355
AMCG00002354 mRNA downstream 91233 11904873 ~ 11905805 (+) True AMCG00002354
AMCG00002353 mRNA downstream 106026 11919666 ~ 11922866 (+) True AMCG00002353
AMCG00002356 mRNA downstream 119985 11933625 ~ 11959805 (+) True AMCG00002356
TU153608 other upstream 111533 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 174806 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 427960 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 1211394 10567912 ~ 10594304 (+) False AMCG00002294
TU153133 other upstream 1956686 9844280 ~ 9849012 (+) False AMCG00002272
TU153704 other downstream 21799 11835439 ~ 11836169 (+) True G122582
TU153909 other downstream 320146 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1244433 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 1311738 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 5144521 16958161 ~ 16960082 (+) True AMCG00002500

Expression Profile