RNA id: AMCG00002344


Basic Information

Item Value
RNA id AMCG00002344
length 1842
RNA type mRNA
GC content 0.61
exon number 14
gene id AMCG00002344
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11837860 ~ 11845019 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCGGGCCGGAGAACCAGATGAGCAGGCCGGCGGTGCAGgtgCTGCTGTTGGTGTGACTGGAGAGGGAACTCCAGCAGAGAGTGGGTGTGTCACGGGGCTCTCCGAGGCTGTGATTGGGCGGCTGCTCAGTGAGCCAGGTCGCTTTGCGTATGCAGCACTGTGCGGTGGGGCTCTGGGGCAGCTCTTCCCTGGAGATGAGCACAGgcaGTTCCGCAGTCACACTGTATGCTCTCTGGTGAGCTGGCTGGGCCTCAGTGACAGTGTGCTGCCAGTGATGGAGGCGTTTGCGGTGGGACTGGGGTGGGAGGGCGCCGACACATTCCTGTCCATTCTGCAGAGGGAGCCACTGCTGCAGGGGGGCGCTCAAATCCTCACACAGGACCTGGTGTCATTCTCTGTGAAGGACGggttcTATGATGCTCGATCCCGGGTTCTGGTCCAGCACATCAGATGCCTACTCAGGGTGTCACCACAGCAGCTGGAGGAggaggagGAGTGTCGACGGCGCAGGAAGGAGAGGGGCAGGAAATGGCGTCGCTATCTCCTGATTGGCCTAGCCACTGTGGGTGGGGGCACTGTGATTGGGGCGGGTGCCGTGCTGGGCGCGGGGGGGGCAGCAGTTCTGGGCTCCGTTACAGGAATTGCCATCATGACATCACTGTTTGGGGCTGCAGGGGCGGGGCTCACCGGGTATAAGATGAGTAAGCGCTACTGCCTGTGCTGGGAGTCCAAGTATCTGTTGGCTCTGGGCAGTGCGCTGGGCTCCCTCCTGGACGGGTTGGTCAGCATGATGGCTCAGGAAGCATTGAAATACACAGTGCTGTCAGGGATCATGACTGCGCTGATGTGGCCCGCCTCCCTACTGGCTGTGGCCAGTGTGATTGACAACCCGTGGGGGGTATGTCTGAGCCGCTCTGCAGAGGTGGGGAAACACCTGGCGCAGGTACTGAGGAGTCGGCAGCAGGGACGGCGGCCGGTCAGTCTGATTGGCTTCAGTCTGGGGGCACGGGTCATCTACTTCTGCCTGCAGGAGCTTGCCAAAGAGACAGgctGCGAGGGTATAGTGGAAGACGCTATACTTCTGGGAGCACCAGTGGAAGGCTCTGTGCGGGAGTGGAGCCGACTGACCAGAGTGGTGTCCGGCCGGATCATCAACGGCTACTGCAGGGGGGACTGGCTCCTGGGCTTTGTATACCGCAGTTCGTCAGCCAGACTGTCCGTCGCAGGGCTCCAGCCAATCAACTTAGATGACCGGCGCATGATtaatgtagatttgtcttctgtgTCAGGGGAGCACAAGCAGCATGAGCTGGGACTCTCAGCTGTGGGGGATCAAGAAGACGGGGTTACTGGAGGAGCAGCGGGGGCATCTGGAGTGGGCAGGGCATCTGAGGTGGAGGCAGGGTCTCACTGCGGATCAGGTAGAAGTGGTGTGACCGTCCAGAGACAGCTGTCCATCACAGAGACCGAGGGGGAGGCCCTGGAGTGCGGGGGGGGAGGCTGGGACATCCCTGACATTTCTGACCTGTTGGACTGCCTGGATGAGGAGGATTCCACTCTCCCTTTGCTATCGGGCAGCATTGTGGGCACACCTGAGCACACTAGCCCCCACCAGGACCTGTGTacccacaccacaccacacactCACCAGCAGGGAGTGCTGTCACCCGGCAGCACAGAGCCCATAGAGCCCACAGAGCCCACATCCCAAAGGGAGCTTACTTGCTGTAGTACCACTGACACACACCGGGGGGAGCTCACTGCCAGCACTACAGTACACACGCACCAGGAATGTTGtaccacacacagacagcaggggGCAGCACATGACTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153666 lncRNA upstream 121159 11716355 ~ 11716701 (+) True G122549
TU153621 lncRNA upstream 125773 11710450 ~ 11712087 (+) False AMCG00002339
TU153607 lncRNA upstream 151542 11685432 ~ 11686318 (+) True G122501
TU153579 lncRNA upstream 294239 11543104 ~ 11543621 (+) True G122478
TU153569 lncRNA upstream 304400 11530886 ~ 11533460 (+) True G122471
TU153714 lncRNA downstream 11459 11856478 ~ 11857326 (+) True G122592
TU153790 lncRNA downstream 49609 11894628 ~ 11898683 (+) True AMCG00002355
TU153860 lncRNA downstream 166978 12011997 ~ 12016084 (+) False AMCG00002360
TU153898 lncRNA downstream 259651 12104670 ~ 12105523 (+) True G122737
TU153905 lncRNA downstream 283361 12128380 ~ 12129678 (+) True G122743
AMCG00002342 mRNA upstream 24220 11805698 ~ 11813640 (+) True AMCG00002342
AMCG00002341 mRNA upstream 37353 11798284 ~ 11800507 (+) True AMCG00002341
AMCG00002340 mRNA upstream 40126 11793620 ~ 11797734 (+) True AMCG00002340
AMCG00002343 mRNA upstream 44990 11791414 ~ 11792870 (+) True AMCG00002343
AMCG00002330 mRNA upstream 71269 11751651 ~ 11766591 (+) True AMCG00002330
AMCG00002355 mRNA downstream 49454 11894473 ~ 11898701 (+) False AMCG00002355
AMCG00002354 mRNA downstream 59854 11904873 ~ 11905805 (+) True AMCG00002354
AMCG00002353 mRNA downstream 74647 11919666 ~ 11922866 (+) True AMCG00002353
AMCG00002356 mRNA downstream 88606 11933625 ~ 11959805 (+) True AMCG00002356
AMCG00002362 mRNA downstream 122356 11967375 ~ 11983436 (+) True AMCG00002362
TU153704 other upstream 1691 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 143695 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 206968 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 460122 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 1243556 10567912 ~ 10594304 (+) False AMCG00002294
TU153909 other downstream 288767 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1213054 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 1280359 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 5113142 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 6070417 17915436 ~ 17984730 (+) True G123807

Expression Profile