RNA id: AMCG00002346


Basic Information

Item Value
RNA id AMCG00002346
length 1469
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00002346
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11800441 ~ 11803744 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGAAGCCACCGTACAGGATCCCTCCTCCTCGCTGTGTAGAACCCGGAAGCAGTGCTGTGGAGTGTTGGcgaaaataaacataaacacgCAACGACAAAGCTCCATATTGTTCTCTcaatagtaatattaatattgatagtcatctttgttatttaaattgtaacCACGGGCCGGGCCGCTGTCTGGTAGCGGtgatGTCCCGGAAGCAATCAGTGAAAGGGGGTCGTGGGAACAAGAAGTGCGATGTGGAGAGGAAGCGAGACGAGCGGGCAGCTCGCAGGGCATTGGCCAAGGACCGCAGGAACCGCCCCCCGGGGGAGGGACCAGAGGAGGAGTTTGTCAGTTTCACCAATCAGCTGCAAGCACTGGGGCTGAAGCTCAGAGAGGTCCCAGGAGATGGtaaCTGTCTGTTCCGCGCTCTGGGGGACCAGCTAGAAGGACACTCACGGGGTCACCTGCGTCTGCGCAGACAGACGGTGGAGTTCATGCAGACGCACCGGGCAGATTTTGAACCTTTCCTGGAGGAGGACATCCCCTTCACGCAGCACTtgtccAGTCTTGCAGTGCCCGGGACGTTTGCAGGCAATGACGCCATCGTAGCGTTTGCCCGCAGCCAGCAGGTCCGTGTGGTCATACACCAGCTCAACACACCTCTGTGGCAGATCAATGGTTCAGAGAAGCCAGTATGTCGTGAGCTGCACATCGCATATCGCTATGGTGACCACTACGACAGCGTCCGGCCAATTGGGGACAACTCAGAGAGCCCCGCCCAGCTCTGCAtcgagactCTATCTCGTGCCGGGGGACAGTGTGAGTCTCAGTGCTCCCAGGCCAGCAGACAGATGGACAGGAATACAACACATTGCACgGACAATGGTGATGGACGGAACTGCAGTGACCTCAGTGCTGAAGCTCAGCCCTGTGCAGCAGTATGGGAGGAGCCGGACTCTGATGCCCCACCATGCCCTGCCCTATGGGAGGAGTCAGGGACAGGGACACGCCTCTTTGGCCCAGTGATTCAGACAGAACAAAGTGCCAGCAAACCAGTGGGGCAGCCACCAGGGGACAGCCACACAGCTAagctttcTAACAGGCAGAGGAAGGAGCAGCAGAGGCAGGAGAAGAAGCGCCGCCAAGaggagagacacagacaaaaGGCGCTGGAGAGCCGGGCTACACAGAACCAGGGCCAGAACCTCTCGGACCAGAACCAGCCCGTCACCTTGGTGCGAGCCCTCAACACGCTCAGCATCTAGCCCAGGCTGGATTGGACTGGAATAGATAAGACTGCACCTGACTGTGCAGgaatggactggactggactggacaggaCTGGACAGGAATGGACTGTGCCATATTGAACTGTAACCTCATTATACTGCAGACTTGCTCTGAGacagtcactgtgtgtgtgtgaatgtgtttgaGCTAGTGTTTGAGTACGACAGCTGGcaagggtgagagagg

Function

GO: NA

KEGG:

id description
K13717 OTUD3; OTU domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153668 lncRNA downstream 81472 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 84296 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 172006 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 350650 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 390855 11407524 ~ 11409586 (-) True G122432
TU153761 lncRNA upstream 40648 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 43337 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 53647 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 59159 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 65863 11869607 ~ 11871379 (-) True AMCG00002351
AMCG00002348 mRNA downstream 9705 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002337 mRNA downstream 16803 11773596 ~ 11783638 (-) True AMCG00002337
AMCG00002338 mRNA downstream 28296 11767284 ~ 11772145 (-) True AMCG00002338
AMCG00002336 mRNA downstream 74490 11720216 ~ 11725951 (-) True AMCG00002336
AMCG00002335 mRNA downstream 89130 11708258 ~ 11711311 (-) True AMCG00002335
AMCG00002352 mRNA upstream 310 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002347 mRNA upstream 11583 11815327 ~ 11821431 (-) True AMCG00002347
AMCG00002349 mRNA upstream 26728 11830472 ~ 11833823 (-) True AMCG00002349
AMCG00002350 mRNA upstream 47773 11851517 ~ 11853625 (-) False AMCG00002350
AMCG00002345 mRNA upstream 60870 11864614 ~ 11869352 (-) True AMCG00002345
TU153720 other downstream 66117 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 115352 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 273086 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1947366 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1967217 9831911 ~ 9833224 (-) True AMCG00002276
TU153763 other upstream 44726 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 68118 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 192084 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1224453 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1224453 13028197 ~ 13029406 (-) True G122862

Expression Profile