RNA id: AMCG00002348


Basic Information

Item Value
RNA id AMCG00002348
length 1346
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00002348
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11787502 ~ 11790736 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGAGATTCTGGGATAGCGGAAGACCCAGCGCTAtccaggcaggcaggcagaagTAATCGGCACTACCAAGATGTCGGCATTGTGTTTCTCCTTGAGAAGCGGATGTACGCTGCTCCGCAACCCGATGTGCCTAGCGTGGGTGCGGGGGGCGGCAGGGGCAGCGGCAGTGGGGGTGCAGCCATCTCCACGGATTAAGAAGTTTGCAGTGTATCGCTGGGACCCTGACACACCCGGAGACAAGCCCCGCATGCAGACCTACGAGATCGACCTCAACAGCTGCGGCCCCATGGTCCTGGATGCTCTGATCAAGATCAAGAACGAGATGGACGCCACGCTGACCTTCCGCCGGTCCTGCAGAGAGGgtATCTGTGGCTCCTGTGCGATGAACATTAATGGGGGGAATACGCTGGCCTGTACCATCAAGATTGACCCCGACACGAGCCGCTATAAATCTATTGAGCCATACCTGAAGAAGAAGGACGAATCTCAGATTGGGAAGGAGCAGTACCTACAGTCAGTGGAGGACCGTGACAAACTGGACGGTCTGTATGAGTGTATTCTGTGTGCGTGCTGCAGCACCAGCTGCCCCAGTTACTGGTGGAATGGAGACAAGTACTTGGGCCCAGCCGTGCTCATGCAGGCATATCGCTGGATGATCGACTCTCGGGACGACTTCACAGAGGAGCGACTGTCCAACCTGCAGGACCCCTTCAGCTTGTACCGGTGCCACACCATCATGAACTGCACCAAGACCTGCCCCAAGgGTCTGAACCCTGGAAAGGCGATTGCAGAGATTAAGAAGATGATGGCTGTGTACAAGGAGAAGAAATCGACCACAGCCTGAGAAGGAGGGGGGCTTCCAatccctgacctctgacctcttgACCCCCccttgaaaattaaattatctttattGACTTGTGATGACCTGTACACCTTCACCACTCCAACACCAACCCGCAAGGCctcagggagagggagagggagagggagagggagaggtagggAGACTTGGCACTGTGTGCAGATTGGGAGAGGaagatattaactgtaaatgtttcttATCAATAGTTGTTAATAAACTTGGGAACTTTAGCCCTTCAGGTGCTTATGCTCCTGGGCACGGCTGTAGAGAGCAGAGGGTGAGcaaaagtgagagagagagggagagctcTGTACTCTGCTGTACACTCTGCTCATATTTATCTCCATTACAATGCAAACTAGATTTCTCAGAAAATTTGAGAAAATCCTGTTGTTTCCTCCAGTTGCTTCTGCAGACTGAGCTTGTGGATCCTGTGTTATGAAGGCATTGGAGacattaataaaatcacaatggttttct

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG:

id description
K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153668 lncRNA downstream 68533 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 71357 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 159067 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 337711 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 377916 11407524 ~ 11409586 (-) True G122432
TU153761 lncRNA upstream 53656 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 56345 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 66655 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 72167 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 78871 11869607 ~ 11871379 (-) True AMCG00002351
AMCG00002337 mRNA downstream 3864 11773596 ~ 11783638 (-) True AMCG00002337
AMCG00002338 mRNA downstream 15357 11767284 ~ 11772145 (-) True AMCG00002338
AMCG00002336 mRNA downstream 61551 11720216 ~ 11725951 (-) True AMCG00002336
AMCG00002335 mRNA downstream 76191 11708258 ~ 11711311 (-) True AMCG00002335
AMCG00002334 mRNA downstream 81807 11703336 ~ 11705695 (-) True AMCG00002334
AMCG00002346 mRNA upstream 9705 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002352 mRNA upstream 13318 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002347 mRNA upstream 24591 11815327 ~ 11821431 (-) True AMCG00002347
AMCG00002349 mRNA upstream 39736 11830472 ~ 11833823 (-) True AMCG00002349
AMCG00002350 mRNA upstream 60781 11851517 ~ 11853625 (-) False AMCG00002350
TU153720 other downstream 53178 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 102413 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 260147 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1934427 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1954278 9831911 ~ 9833224 (-) True AMCG00002276
TU153763 other upstream 57734 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 81126 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 205092 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1237461 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1237461 13028197 ~ 13029406 (-) True G122862

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1687408 True 977 lncRNA 0.48 5 NC_048581.1 64126850 ~ 64128340 (-)