RNA id: AMCG00002349


Basic Information

Item Value
RNA id AMCG00002349
length 879
RNA type mRNA
GC content 0.63
exon number 4
gene id AMCG00002349
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11830472 ~ 11833823 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACCAATAAAGCGACCTGCGACTGTCAGCAGTGCGCTTCCCCCCCTCTGTTCGGGCCGGTGCCGCTCCGGTCCAGCTGCAAAACAGCTTGAAAGAGGGACAGTTAGTTTCAGCCACTCCAGTTCGAGCAGGGCATCTGTCCGCCCGAGCCAGTGCTGACGGATCGGTACCGGGACCAGCGCTCCCAACTCCGTCGAATCCAGATCCTCGACTGATCCCCTAACGGGCCAGTACTGATACACAGCAGCCTCGGTAGACGGGGATTTCATCGCAGCGCAGGCATCCCTGCAGCCGGACCTGTCTTACTGGACCGAGAGTCGgtGACACCGCAGTGATGTGTGACTCTCAATGGGAGTGTGATGGTGACAGTGGGGCAGAGGGCGAGCAGAGCAGTGCACGGGCATGGCTGCTACCCCCCCCGCCGGCGTACAGGCTGGGCTCCCCGGGGCTCCCACGTGCGCGCCGGGGGAGGGTGGCGTGCTTGGTGTGGGGGGCAGGGCTGGTGCTGCTGAACGGGCTGGTGTGTGTGGGCGGGCTGGTGCTCCTGGGTGTCGTGTTCTCTCTTGTCCTGCTGCCCGCTGCCGCCCTGCTGACCATCGGCTTCCAGTGCCACTCACGGGTACTGCACTCTCAACAGCAGTACTGTGTGTCTCTGCTAGATGATAACTCCTCCTCCGCGCTCATCATCCTGGGTTTCGTGATGATGTCACCACTCCTCGTGGTCGCCATGGTCATCTATTGCAGCCTGGCTCGGCGGCTCCGCCTCTTCCGTCTGTTCCAGCCCTGTGCACGTGCTCTGTACAGCGGGGGGAGCTGGCGCGGGTGCGAGGAGTATGGGGGAGctgAGGTCATTAAAGAGCTGCTCTACGACACACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153668 lncRNA downstream 111503 11718530 ~ 11718969 (-) True G122551
TU153665 lncRNA downstream 114327 11714409 ~ 11716145 (-) True G122548
TU153646 lncRNA downstream 202037 11601972 ~ 11628435 (-) True G122530
TU153524 lncRNA downstream 380681 11449566 ~ 11449791 (-) True G122438
TU153515 lncRNA downstream 420886 11407524 ~ 11409586 (-) True G122432
TU153761 lncRNA upstream 10569 11844392 ~ 11845671 (-) True G122632
TU153762 lncRNA upstream 13258 11847081 ~ 11848192 (-) True G122633
TU153766 lncRNA upstream 23568 11857391 ~ 11859325 (-) True G122636
TU153748 lncRNA upstream 29080 11862903 ~ 11864056 (-) True G122621
TU153768 lncRNA upstream 35784 11869607 ~ 11871379 (-) True AMCG00002351
AMCG00002347 mRNA downstream 9041 11815327 ~ 11821431 (-) True AMCG00002347
AMCG00002352 mRNA downstream 24833 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002346 mRNA downstream 26728 11800441 ~ 11803744 (-) True AMCG00002346
AMCG00002348 mRNA downstream 39736 11787502 ~ 11790736 (-) True AMCG00002348
AMCG00002337 mRNA downstream 46834 11773596 ~ 11783638 (-) True AMCG00002337
AMCG00002350 mRNA upstream 17694 11851517 ~ 11853625 (-) False AMCG00002350
AMCG00002345 mRNA upstream 30791 11864614 ~ 11869352 (-) True AMCG00002345
AMCG00002351 mRNA upstream 37281 11871104 ~ 11872276 (-) False AMCG00002351
AMCG00002357 mRNA upstream 48250 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002358 mRNA upstream 72087 11905910 ~ 11913015 (-) True AMCG00002358
TU153720 other downstream 96148 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 145383 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 303117 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 1977397 9842095 ~ 9853075 (-) False AMCG00002279
TU153137 other downstream 1997248 9831911 ~ 9833224 (-) True AMCG00002276
TU153763 other upstream 14647 11848470 ~ 11854891 (-) True AMCG00002350
TU153773 other upstream 38039 11871862 ~ 11872862 (-) False AMCG00002351
TU153859 other upstream 162005 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1194374 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1194374 13028197 ~ 13029406 (-) True G122862

Expression Profile