RNA id: AMCG00002351


Basic Information

Item Value
RNA id AMCG00002351
length 1014
RNA type mRNA
GC content 0.65
exon number 2
gene id AMCG00002351
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11869607 ~ 11872862 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGGCTGGCTGCGAGCCCTGCTCCTCGCATGTGCCGTGCTGCTCGGCGCTTTCCGGGCTTGTGGAGGGGCAGGGCCAGCCGGCAGGGATTCGGTGCCACAGGCGCCCTGGAGTGCAGGCTTGCAGGGAGCTGGCCTGTGGGAGCTGGGTGGGGTGCACAGCAAGCGGAAGAGAGATGAAGATTCATTGCTGTTACCATCAGAATCATCAGCCACCAGCACGCCAGCACTGGagcggggagagggagaagcaGCACTGACCCACACCAGCCACTGGGGCGAGGACCAGCACAGCAGCAATGACGATGATGGTGATCGAATAATGGCCCCAGGCTCCACGGCTGCAGAGCTAAGCCATTCTGGGTATAGCAGCTCCAGCAGGGTGAGAAGGCGGGGCAGCAGTGAGGGCATGGCGGTGGGGATGGTGTGTGTGTACCGTGTGAGCAGGGGCAGGGCGGtgggtggggttgggggtggaAGGCTGTGTTATAGGGAGCAGCAGCACGGGTTTGAGTGCCGGCAGGGGGAGTGCCAGGTGGTGCGGTCCTCGAGGCCAGGGGGGCTGGTCGCCAACCTGCTGAACAACGGTAGCGTGCTGCTGCAGTGGGGGGGCGCGGGACAGGGGGAAGTTCCAATGGAGCCCAGCCAGGGGCAGAGAGCTTGGGGGCAGAGCAGTGAGGGGCAGCGGAAAGTAGAGGGTGCACAGGTCGGGCGCAGGGGGACTTTGTGGCGGGCGGGGGGGTTCTGGCTCAGCTGCTCGTGGAATGGTTCATACTCGGAGCTGCAGTGTGATGGTGTAGCACTGGGCGCCGGCTGCCGTGACTTTCTGCTGACCGAGCTGCAGGACAGTGTGCCATACCGCGTGTGCCTGCGCCCCGCCTCCGGCAACAGCCCCAGCAGCACAGACTGCCTGGAGTTCTCTCTGCGCCCCCCTGCTGTGCAGGAGCTGGTAGTGGCCATGACGGCGGTGGGCGGGGCCATCTGTGTGATGCTGGTGGTCATCTGCTTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153748 lncRNA downstream 7048 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 11779 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 22912 11847081 ~ 11848192 (-) True G122633
TU153761 lncRNA downstream 25433 11844392 ~ 11845671 (-) True G122632
TU153668 lncRNA downstream 152135 11718530 ~ 11718969 (-) True G122551
TU153878 lncRNA upstream 171039 12043315 ~ 12045019 (-) True G122726
TU153975 lncRNA upstream 323644 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA upstream 369845 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 1128565 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 1179750 13052026 ~ 13052390 (-) True G122869
AMCG00002345 mRNA downstream 1752 11864614 ~ 11869352 (-) True AMCG00002345
AMCG00002350 mRNA downstream 17479 11851517 ~ 11853625 (-) False AMCG00002350
AMCG00002349 mRNA downstream 37281 11830472 ~ 11833823 (-) True AMCG00002349
AMCG00002347 mRNA downstream 49673 11815327 ~ 11821431 (-) True AMCG00002347
AMCG00002352 mRNA downstream 65465 11804054 ~ 11805639 (-) True AMCG00002352
AMCG00002357 mRNA upstream 9797 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002358 mRNA upstream 33634 11905910 ~ 11913015 (-) True AMCG00002358
AMCG00002359 mRNA upstream 40834 11913110 ~ 11918100 (-) True AMCG00002359
AMCG00002368 mRNA upstream 123750 11996026 ~ 12006352 (-) False AMCG00002368
AMCG00002367 mRNA upstream 183365 12055641 ~ 12060552 (-) True AMCG00002367
TU153763 other downstream 16213 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 136780 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 186015 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 343749 11524893 ~ 11527355 (-) False AMCG00002317
TU153139 other downstream 2018029 9842095 ~ 9853075 (-) False AMCG00002279
TU153859 other upstream 123552 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1155921 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1155921 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1776952 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 3068984 14941260 ~ 14946311 (-) True G123263

Expression Profile