RNA id: AMCG00002356


Basic Information

Item Value
RNA id AMCG00002356
length 1684
RNA type mRNA
GC content 0.51
exon number 5
gene id AMCG00002356
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11933625 ~ 11959805 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtTCCCTGGCAGGCTGAAGTGGGGGATCGTGGAGAGCCATCAAGCAGCAGACACGGCAAACCTTATTGCAGACATGACCTCTGATAATTTGATCATTGCTCTGGAGCCCGAGGTCGCCTCAGTCTGGTGTAAACAGCTGTCTGTGAAGGACTTCTTTGAAGAGGGAAGTCCTGGGGGGAAAATGGAGGATGTTCCAGGGATCCAGTATATCCTTGTTGACTGCGGAGACAAAAGTGATGTCACTTGGTTAGAAGGCACCATCAGAATCACATACAAGAAGTTTGTGTCACTTTTTGCTGAAAGTTTAGGGGAGATAGGTGGAAGAATTGAAGCTTTACTGAGTACACCAGGCTTCAAAATAAACATCCTGCTGTTTGTCGGAGGTTACGCTTCAAGCAAATGTCTCCGTAAGGAGATGATGCGGCAGTTTGGCAGCAGGTGCACTGTGTTGTTCCCTCGTGATCCACAGATAGTCATTGTAAAGGGAGCCGTTCTTTTTGGAAAGAATCCTAAAATTATCAGATCCCGAGTCAGTGCTCTGACTTACGGCATTTATGAATCCGTGGTGTTTGACCACATGGTCCACAGACCTGAGAAACTGAGAATAACTAAAACAGGACTTTACTGTGCagatctctttaaaaaaatggtagAGAGGGATCAATCAGGAGACAATAACCATGTAGTAGAGTATAAATATTTGCCAATTGACATCGAGCAAGATACAATGgaattcttattttattgtactgaGGCTCTGAATCCAAAGTATGTGGATGATCCTGGAGTGAAGAAATTGGGCTCATTTGTTGTGCCCATGCATAAGGTCAGTGTGGAAGGATACCGTATAGTCATTGTCAATGTCAAGTTCGGACTGACGGAGATCCAAGTCTCAGCTACTGACCTGTCATCTGCTCCTAGCTTTGCGCCCCTCGCTTCCGTACCTCTGTGCTCTCAAATGCTCTTCGGCCTGGAAGGCTCGGGTGACACCCTCACGTTGCGCAGCTGTGAGAATGACCTCGAGACCCGGCAGAGGAAGTGGCGAATGTGCTCCTTCTTTGACGGTTTGTCCTTTCTCGGCGCCTCAGCAGCCCCTGAAACACAGAGTGAAACACTGTTGTTTCTGTCCCCCTTCACCACCTCCCCCAAGACTGTCCTGTTACTCTGGCTTCTGGATTTGGTTCAGAGCTCAAGTGTTGCAGGAAAGTACAGCCACAAAAATGTCTTCACCTGTGAGtcattctcacctggactgtCAGCCATGGAGAGGATTGCCTCCGAGGACGCCTTGTGGCAGGGGGGGATCTGGGCAGAGTCTCTGGGATCAGAGGGCACTGGGGGAGGTGGCAGGGTATCGTCTGCCCTCGCCACAATGCCGCAGATCGGATCCACAAGCCTCTGCTCAAGATCCGTGAGGCACAGGGAACCCAGTCTGCTACTGTTTTCTGTGCGGGCAgcctctccctcttccaaccTGATGGCTAGAGCAGTGGAAGAATGTCTGTTCGTCTCCAGCTCCGCCTCCTGCTGGACGAGACTGACAATGTCCGCAGCGCAGTCTCTCAGCACTGCCTCCTGCCTGTCTACTGACTTGCCCTGCTGGCCTGGGAGGGGGGAGCTCTCTCCCCCAACTCTGTTATCAAGCACAGTGGGGCTCAGCTGGTCCGGGTCCCAGGAGGAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153790 lncRNA upstream 34942 11894628 ~ 11898683 (+) True AMCG00002355
TU153714 lncRNA upstream 76299 11856478 ~ 11857326 (+) True G122592
TU153666 lncRNA upstream 216924 11716355 ~ 11716701 (+) True G122549
TU153621 lncRNA upstream 221538 11710450 ~ 11712087 (+) False AMCG00002339
TU153607 lncRNA upstream 247307 11685432 ~ 11686318 (+) True G122501
TU153860 lncRNA downstream 52192 12011997 ~ 12016084 (+) False AMCG00002360
TU153898 lncRNA downstream 144865 12104670 ~ 12105523 (+) True G122737
TU153905 lncRNA downstream 168575 12128380 ~ 12129678 (+) True G122743
TU153906 lncRNA downstream 170073 12129878 ~ 12130747 (+) True G122744
TU154008 lncRNA downstream 412996 12372801 ~ 12373031 (+) True G122829
AMCG00002353 mRNA upstream 10759 11919666 ~ 11922866 (+) True AMCG00002353
AMCG00002354 mRNA upstream 27820 11904873 ~ 11905805 (+) True AMCG00002354
AMCG00002355 mRNA upstream 34924 11894473 ~ 11898701 (+) False AMCG00002355
AMCG00002344 mRNA upstream 88606 11837860 ~ 11845019 (+) True AMCG00002344
AMCG00002342 mRNA upstream 119985 11805698 ~ 11813640 (+) True AMCG00002342
AMCG00002362 mRNA downstream 7570 11967375 ~ 11983436 (+) True AMCG00002362
AMCG00002364 mRNA downstream 31152 11990957 ~ 11992957 (+) True AMCG00002364
AMCG00002360 mRNA downstream 52166 12011971 ~ 12016053 (+) True AMCG00002360
AMCG00002361 mRNA downstream 65197 12025002 ~ 12027049 (+) True AMCG00002361
AMCG00002363 mRNA downstream 70179 12029984 ~ 12045017 (+) True AMCG00002363
TU153704 other upstream 97456 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 239460 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 302733 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 555887 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 1339321 10567912 ~ 10594304 (+) False AMCG00002294
TU153909 other downstream 173981 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1098268 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 1165573 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 4998356 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 5955631 17915436 ~ 17984730 (+) True G123807

Expression Profile