RNA id: AMCG00002358


Basic Information

Item Value
RNA id AMCG00002358
length 2850
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00002358
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11905910 ~ 11913015 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCGGGTCACATGACCGCCGGTCAGCTGAGCGGCTCCGTGAAAACCCCGCAAATCCAGAGGCGGACGCGCCGCTGCGGGACTGGAAGCGTGAGTGCAGCGGGATCATCTGCCACGGAGTAACGGGATCACCCTATGCGGACTGTATTGACCCCTTGCTGACCCTTACTTAACCTGCTGACCTGCAGTGATGGGAGGGGGCGTGCTGGTGTGGGGGACGTTGGCGCTGGGTGAGAACTTCACGTCTGTCTGCCCCAACGGCTCGGCCTGGGTAATGGAGGTGCTGGGCGAGTGTTCACAGGACGGCAGGGACATGGCCAGCGTGGTGCTGGGGCTGCTGTCCATCGTCTGCTTCGGGGTCTCCAGCATACCTCAGTATGTCAGCTCGTGGCACAGTGGGAACATGGACAGGGCTCTGTCAGTGTGGTTTCTGCTGCTTTGGCTGGGTGGAGACTCCTGCAACCTCATTGGCTCCTTCCTGGCTAACCAGCTGCCCCTGCAGaaataTACAGCAATTTACTATGTGCTGAATGACCTCCTGATACTGAGTTGGTTTGCCTACTACAAGATCAGGAACCGCAATAACATCAGTGATTTTGGCAgcagCACAGCGGTGAATGCATTGGGTGTGTCTTTCCTGATTGGAGTCTCCATCTCCTCCATGCTCCTGCCCCAGACAGAGCCTCATATTGACACGGCTGCTGGTCCCTTCACCACTGAGGAGATTGTGGGCTTTGTGATCGGCTCGGTGTCCTCGGTGCTGTACCTGTTCTCCCGCCTGCCCCAGATATATACCAACTTCAAGAGGGCCTCGACGAAGGGTGTGTCGTACTTCCTGTTTGCCCTGGTGATCCTGGGTAACACCCTGTATGGAGTGAGTGTGCTCCTCAAGAACCCTGACCGCAGCCAGAGCGAGGGCAACTATATCCTGCACCACCTGCCCTGGCTGATTGGCAGCCTGGGGACTCTGAGCCTGGACATCGTGATCTCCTTCCAGTTCCTGCTGTACCGCAAGTCCCCTCAGAAGGGAGAGGAGAGCGAAGCCTTGCTGGGCAATGGCTCTGACACCTGAGAGCAGGACACTCGCGTACACACACATTCGCACAAACGCACTCTTTCTTCTGTCTGTTCTCATTCTTGATCTCCAACATTCCCAGCAGGGTCGTCAGCTCCAGGGTCCCGGCACTCCAGCTCTGTCCATGTCTGCGAgactgagtgtctgtgtgtctgataCCCGGCTCTATATTCAGTGTTTACTGTGGCAGCCCCTCTGGCAACGTCACTTGTTAGTTTATtctgaattgtattgtaatgtaatgtatacgGTATGACTGCGAGCTGCCCTGGCCTGAGGACACACCTCTGtccgctgctttatttttattacaaattatcACTTGAAGCAAAACCAAACTGATGCCTCAATGAGGGCCTGGCAGTGCTGGATGGTTTGAATTCTGATTGAAGATCTAAGGGCACTGAACTTGACTGGTATGGACACTGAGACTGGTACACTGCCGACAAACCAAAACCATTCCTACAGGGAAAAACTCACTCCCTTGAGGAGACACTGGAACTGTCTCCTTCCTTATGGACTGACAAATTATCACTGACAAGCAACTGACAGTCCTGGTGCTCAATGTGCTTATGGGTTGAACACTAACACTGACGTCTGTTGCTCATTGTCACTACAACAACACAATGTGGGATTCTTGATGGCATTAAATGACGGTTTTatgtctgactgtgtgtctctgtctagACGTGTGGGGTGAGGTGGGGGGTAAGCTGTAGACACTCCCGGCTCTTCAGGAGGGTGAAAGTTTGAAAGAGAGACTTGAAAAGAGGGAGGAAGGCAGGGAGTGGGTCTCTGTGTGTTATTGTCTGTGTTGTGAGTGAGAGAAAGTGCTGAGTTACTCTGCAAACTTAAAGTAAAGAGCTGCACAACGACCCTTCAGGATTCACAGATGCTTCTCATCGTAAGTACATTTTCTTCCTAGGGCCACTAGGTGGTGCCCACGCTGCAGCAGCATCATCACACAGTTGTACAATACAAGCTGACCAGCAGAGTACGCCACCACTAGCTCTGAGGTGCTGCAGCCTGCTCTCTGCTGAACCTGGACCTGAACAGATGGCTGGTCAGAGTTGGGGTCTGTAATGTAATTGGTCAGTTAGTGGAATTTCAAATGCACCACTTAATAAGTACAGATAGAGTCTCAGCAGTGTCTCTCTCATTGTGTCAGAGCTTCTGTGTCACAGTGTCGGTGTTGTATCTTCTCGCTGTGTTTGGTCAGTGAATCGGAGTGTCTGTGTCAGGGCTGTGTTGTTCAGGGTTTCAGTGCTGTGGACTGCATCAGTCTAGGAGTCGGTCAGTTTCCGTGTTCAGGCAGCGTTGCCTCCCTCTGACGTGCTCCTGTGCGTGAGGTGGTGCTGTGCGTTGAAAGCGGCAGCGTCCTACAGCAGACTGCCCCACCAGCTCTGGCCTGGCTCTAATTGACAGGTCGGTTTGAGTGGAGCACCTCCTCTCTGTGAGGgtgacatactgacacacacaaatgctCACACATGTATGCAGGCAGGTTACAGTGCTTTGTTCTACAGTGGACACTTTATTGGTACAGGTGTACAGTGGAGTTCTTTCTAGTCTCTATCAGCTGAAGCGAGAGTGACCGCGTGCAGGACACAAGGCACAGGGTGTGGGTGGGGCTGCACACAACAGACTGGAGGGCAGCGGGCAGTTTGTCAATCTGTCCTGTTAGAAAGAGTGAGTGGAGCTATCAAAGTGCTAGTGTTGTCTCAAAGGTTGTCTCCTCCATTGCTGGAGGGATGgaaagtgtgggggggggggact

Function

GO: NA

KEGG:

id description
K23678 PQLC2, SLC66A1, LAAT1; solute carrier family 66 (lysosomal lysine-arginine transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153768 lncRNA downstream 34531 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 41854 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 46585 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 57718 11847081 ~ 11848192 (-) True G122633
TU153761 lncRNA downstream 60239 11844392 ~ 11845671 (-) True G122632
TU153878 lncRNA upstream 130300 12043315 ~ 12045019 (-) True G122726
TU153975 lncRNA upstream 282905 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA upstream 329106 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 1087826 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 1139011 13052026 ~ 13052390 (-) True G122869
AMCG00002357 mRNA downstream 13211 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002351 mRNA downstream 33634 11871104 ~ 11872276 (-) False AMCG00002351
AMCG00002345 mRNA downstream 36558 11864614 ~ 11869352 (-) True AMCG00002345
AMCG00002350 mRNA downstream 52285 11851517 ~ 11853625 (-) False AMCG00002350
AMCG00002349 mRNA downstream 72087 11830472 ~ 11833823 (-) True AMCG00002349
AMCG00002359 mRNA upstream 95 11913110 ~ 11918100 (-) True AMCG00002359
AMCG00002368 mRNA upstream 83011 11996026 ~ 12006352 (-) False AMCG00002368
AMCG00002367 mRNA upstream 142626 12055641 ~ 12060552 (-) True AMCG00002367
AMCG00002373 mRNA upstream 169096 12082111 ~ 12096642 (-) True AMCG00002373
AMCG00002377 mRNA upstream 186309 12099324 ~ 12100920 (-) True AMCG00002377
TU153773 other downstream 33048 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 51019 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 171586 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 220821 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 378555 11524893 ~ 11527355 (-) False AMCG00002317
TU153859 other upstream 82813 11995828 ~ 12006351 (-) True AMCG00002368
TU154046 other upstream 1115182 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1115182 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1736213 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 3028245 14941260 ~ 14946311 (-) True G123263

Expression Profile