RNA id: TU153860


Basic Information

Item Value
RNA id TU153860
length 1565
lncRNA type sense_over
GC content 0.40
exon number 4
gene id AMCG00002360
representative False

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12011971 ~ 12016084 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGTATTCGtcctggagcagcagcagcaggcaaaGTCCATCTTGCACCACATCAACATCTCGGAAATCAAGCAGCTTcctttggtttattttggaCATCTGAGAAAATCATGGGAAGGAAAGATGCGACTGCTGCCAGGCTTCCAGTTGATCAATACCGCAAACAAATCGGAAAACAGGACTATAAGAAAACCAAATCTGCCTTAAAAGCAAGCAGATTAAAAGCAGAAGCTAAGAAAAGTGCCCTGGGAATACGGAAATGGACTTGGACCTGGATGTGGAGTAAAAGCCGCCCTCCTTGAATGCTGCCTGGCTCTCAGCAGACTCCATCGCCCCCTCGGTCTTGACTGGGCAGAGCCAGAGGAGATGAAGACTCACTGTCCTTTTCAGAGTCCCAGTGCATCGCGCTTCATTCACCACGGCTCATAAAAACAGGCTCCCTGCTGTGTGGCCTACCACACTTCCACTGCACAAGAAGGGCTGCGCATGGTGGATGGGCATCATAAACATCTGACCTAAAAGGGGAATGAAAGAATGACCGGATCGACAGGGACAGCAATCAGACTCGCAAGTTACAGACAGTAACTGCTCTGGACGGCATCGGTAGTTCTGTGTTGTTTAGGGTGTTCATGATGTTTAATCACTCAGAAGCACCATTCCACTATATTTGTGTTATTCCAGATATTTTTAGGTGGcgtgcaatcaaatgttttcaaaaccaaaaaagcacaATCTCATTGTCCTGATTTGGTACTGTTATATTGTGTAGGGACTTACGATGCTGATCTATAACACATTGTcttactttcatttaatttcacatgcTTTGGGAACAAAAATAATGAGGAGTGAAAGTTTTACCTGCAAAAACAATAAGTAGTGTATGGAGAAATTTTCTAtttctttggggaaaaaaaatgtgtctttaaccttgaaattatttctttataataTACGAAAAGGGAAGAAATTATAGCAATTTTTCAAATATGGGCTTTTGTTTAATGGGGTATTGGGACTCTGAGAGGAAAACTTTTGATATAATTCTGCGGTTTGTTAATTAATACTGGAAAATACAGCCaagaaagaaatgaataaataatacataggTAGAAAAACTACCTTTACTTGTTATCTTTGCTAAAGGTCATTGGATCTGACAGGAAGTGAACtatagtaaaaatatatattcatttgtttCACTGTAGAAATATGCAAATCTATCGCTGTAAAGCAATCTCCGTGCATTCCTCTACACAAACTATACATTCAGGGATCCTACTCATGCAGATTTGACTTCTGATCGTGGGCTGATTAAACGGGTCTCCAGTTCCAAGCAACACTCTGATGAATCGAGGAGATGTTTGAGAGCTGCTGGTAATACATTAATACTGCAGACGTGGTGCTACATGGCAGAGACACAAACTGTTTGAAGGAAacataatgtaaatgtgaaGCATTTGTTTAAACGTACAATTGAaatctttgtattttaaaaattgattaaattgattCGACACACAAGGTTGATGAAGTTCCCTTTGACTGTTTATAATGAACTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153790 lncRNA upstream 113314 11894628 ~ 11898683 (+) True AMCG00002355
TU153714 lncRNA upstream 154671 11856478 ~ 11857326 (+) True G122592
TU153666 lncRNA upstream 295296 11716355 ~ 11716701 (+) True G122549
TU153621 lncRNA upstream 299910 11710450 ~ 11712087 (+) False AMCG00002339
TU153607 lncRNA upstream 325679 11685432 ~ 11686318 (+) True G122501
TU153898 lncRNA downstream 88586 12104670 ~ 12105523 (+) True G122737
TU153905 lncRNA downstream 112296 12128380 ~ 12129678 (+) True G122743
TU153906 lncRNA downstream 113794 12129878 ~ 12130747 (+) True G122744
TU154008 lncRNA downstream 356717 12372801 ~ 12373031 (+) True G122829
TU154010 lncRNA downstream 388858 12404942 ~ 12411141 (+) True G122830
AMCG00002364 mRNA upstream 19040 11990957 ~ 11992957 (+) True AMCG00002364
AMCG00002362 mRNA upstream 28561 11967375 ~ 11983436 (+) True AMCG00002362
AMCG00002356 mRNA upstream 52192 11933625 ~ 11959805 (+) True AMCG00002356
AMCG00002353 mRNA upstream 89131 11919666 ~ 11922866 (+) True AMCG00002353
AMCG00002354 mRNA upstream 106192 11904873 ~ 11905805 (+) True AMCG00002354
AMCG00002361 mRNA downstream 8918 12025002 ~ 12027049 (+) True AMCG00002361
AMCG00002363 mRNA downstream 13900 12029984 ~ 12045017 (+) True AMCG00002363
AMCG00002366 mRNA downstream 30718 12046802 ~ 12051713 (+) True AMCG00002366
AMCG00002365 mRNA downstream 44672 12060756 ~ 12075382 (+) True AMCG00002365
AMCG00002369 mRNA downstream 63879 12079963 ~ 12081582 (+) True AMCG00002369
TU153704 other upstream 175828 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 317832 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 381105 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 634259 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 1417693 10567912 ~ 10594304 (+) False AMCG00002294
TU153909 other downstream 117702 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1041989 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 1109294 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 4942077 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 5899352 17915436 ~ 17984730 (+) True G123807

Expression Profile