RNA id: AMCG00002363


Basic Information

Item Value
RNA id AMCG00002363
length 3876
RNA type mRNA
GC content 0.38
exon number 18
gene id AMCG00002363
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12029984 ~ 12045017 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGATGACTGTTCATCTAAAATGATAACCATTAGCAAATCATTAGGTCCAATAAAATGTCCTTTCGGTTAAAGTTTGACTAGCTCAAAGGAGTGTTTCAACAACCATTTATGCTCAAGAGCCTGAGGAATGACAAAGAGCTTTTCATTAAGacGATTACGAAAACTGAATTCTGGGAACACAAGAAGGGTCCAATGGTGGACAAGATCCTAGACGTTCAAGAAGGAACTGAGACACCATATCCAATCTATCAGttcaaaGCATCTGATCTTGCAGTGAAGACATTTCGAGTAACGGGGGAGACAGacaataaaattgaaattgacaaTGATGGATGGCTGTATCTACAGCATGCACTTGACTGGGAGGAAAAGCAGAGTCACAGTTTAACGATTGAAGCCCTTGATGAGACATCAGAGACAGTGGAGGGACCTATCTCAGTCACGATAATTGTAAAAGACGTAAATGACAACAGGCCAATCTTCAACCAGTCTGAGTACAATGGAGTTGTGAGAGAGCACTCATTAGCTGGGGAGCCTTTCATGAAGGTTTTTGCCACCGATCTGGATGACCCAAGCACCTCCCATGGCAAACTGAGattcagcattttaaatcaaattccaGATCGCCTCAAGGTGCCTCTTTTTCAAATTGATCAGTTAACGGGGGATATTTCCACTACTCCAGAAGGGACAGAAGCACTGAAGGCCAGAACACCATTCATGATTCAtcaagaagaggaagaggacagTCTGCAGAGCTTGATGAGAAAATTTGATGCATATTGCATTCCCAGACAGAATGTAACCTATGACATGAATCCATTCTTCACATGTGTACAGCGAAAAGGCGGTTTGAGGGTGGACCCACAGATTGATGCTGACTATACTCTCATTATTGCCGTCAAAGATTTAGAAGGCTTGTCAGAAAACGCTTTGAGTGGAAGCACAAAGGTGAACATTGTggtgaaacagaatctttgggTCGCCCCCAAACCATTGTCCATTCCAGAGAACTGGCCAGAAGTGCACCCCTTCCAGATCACACAGGTCCAGTGGAATGAACCAGGAGCAGTATATGTACTTGCACAAAAGGAGAGGTATCCAAAGTTTCCCTTCACGATAGATATAGAGGGCAGAATCTTTCTGACTGAACATCTTGACAGGGAAGAAGAAGATATgTATGTATTGGTGGTATTTGTCCGAGATGAATATAATAATGATCTGGACAGACCATTGGAGATTCACATCACTGTTGAGGATGAAAATGACAATGCACCAGTGTGTGAGGAGAAAGAGACTGTTTTTGAGGtgcaggaaaatgaaaaaatagGTAATGAGATTGGAAATCTAAAAGTCACAGATCTGGATGAAGAAAATACAGAGAACTCCTTGCTCAGCTATCAGATCAAGAGTCAAGAGCCAAAGCATCCTTTTCCCAGCATGTTCAGCATTGATGAAAATCTTGGGAAAATTCAGATTGAAAACGCACATTTCCAGAAGCGGGAGTTTCCACAGTACAACCTAACAGTGAAGGTTTCTGACAAGGGAGGGAAAGCCTCAggaTTAATCACTGAATGCAAAATTGTCATAAAAATCATTGATATCAACAACCAGATTCCAATATTTCAAAAAAGTCAGTATGAGCCCATAACCAAGTCAGAGGACACCGCTGTTGGAACCACTTTGCTCAGTCTACAGGCGACTGATAATGATGACCCAGGAACAGGCAGCTCAAAAATCGTGTACACTGTCGGAGAAGGGGATCCCGAAGGAGTTTTTGCTATCAAtacaaatgaagaaacaaatgaaGGATATCTTTATATTGTCAAGCCCCTTGACTTCGAAGCTCAATCTCTTCATCGCCTTCGTATTGACGCGAGAAACCCAGAGCCCTTGGTTTCTGGAGTAAATTATAACTCCAGTTCCTCAACATTTGTCACCATTAATGTTACTGATGTCAATGAAGCCCCAGTTTTTGATAGCGTTATTTACCAGGAAACTGTCCTTGAAGACCTTGCTGTTGGAACCGTGATTCTAAATGTACATGCCAATGACCCAGAACATACAAAAATCAGCTATAGACTAGAAGACGACATCTTCAACTGGTTGGAAGTGAATCCCGATACTGGAGATATAAGTTCAAAAGCAAGCCTGGATCGGGAGAAGACTGATGTGTACAATGTGCGCGTTATTGCTCGTGAGAAAGAAATCCCTTACCAGGAGACAGAGGTGCAAGTcactatttatttgaatgatatCAATGACAATATCCCAAAATTGACAATGCAAAACCCTGAAGCAGTCTTTTGCTACCCTCTGGGAGAACCCAAGGTTATCCTGCTGGAGGCAACAGACCCTGATCTGTCACCCTTTGGAGCCCCTTTAACCTTCTCCATTGATGACAAGTACTCTCTGGACTGGAAAATCGAACAAATTAACGGAACATTTGCAAAGCTTGTAATGCAGCACAAAAATTTTCAAGAGAAATCCCACAAGGTTGACATaaaaatcaaagaccatggaaatTTAGAAAATTCACAACCATTTTCAGTTGGCATTTGTACATGTTCTAAGAATGGAGATTGCTACTTTGAGCCAGACACACAAAATGATAAGCCATCAATTACCTTAACTGCTGGTGTGCTGGGAGGAACATTTGCATGCATTGCTTTGATTCTGATGACTGTGTATTGCCGGATTAAAAAGAGGAATCCTGAAAACACGACAAAACAACCTAATGGTTCAGCAGAAATAAATCCAATGTTAGAGTAATTTTCCACAAAAGCACTCATTTTaagatcatttttaaaaacaaccaaataacAGCACTCTCTTATCAGTACCTTCCTGATTATTATATCTTCTTGTGTATGTCTGTTTATCAGCGATGTCAAACTCATTGTCCTTTGCATTGATGTGTCTCCTAGTTTTCTTTTCAACTGAGTTCGCCTTTACTTAATTGGCTTAATTATGTGATTATGTAACTAGAGATAAAATAGAAATTCCTTCCAGGTCTTAGAATATTTTGTAGCTCTTTTTCCTTGGCCAAGCTTAATATTTAAATCGGCAAGtgtgcataaatatatacatacatacatatatatatatattaatcagagGAAATGATTAGTAAGTACTGAATATATTAAGAATAAATCATAAATGCCTACAGTCCTTCAGGTTCAGaggctgaattaaaaataaaggaagtgCAATGCTTCCTAGCCCTggctattaaaacatttatggtcaagcaaaaaaaatgtataaggaATGTAAGGTTTTAGCTTATTTTGATGAGTAGTTTTAGCACCAGCATTGCATATCTTAATtagctattttaattaaagcacatATGTTCACTGTCTAAAACTAAATCTTGCTGATTGTTACCTGAATGAAAAGCTTAAGAAGTAAGATATTTAGTAAGTAAGTTGCTTTTTCTTGAAACAGAGAAATACAAGTCTCATTAATGATCTTTGGTGTACATGAACTTTATAATGAAAaccattgaaaatgtattttgggaGTTATgtgtaatacatatatgtaacgcagttatatgtaatgtaatacatGTAATCATCATATGGAGGACTACACagaatgtgatatattattcatatttattgagAGACATACAAAGAAGCTAAATAGCTAGGGAATGGTTTATTTACCATAATGCCAGgccattcattaaattaaaggataataataacataactgAAATTATATTCTGGTCCTTCCATCTgtgtaacaataaataattataatttgcagAGCCACCTCACAGTAGGATACAATACTGTTTATTGTTGATTTTACTGTACTACAATAGACTTAAccacaatgcaaataaaaaaagttaaaacga

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06811 CDH17; cadherin 17, LI cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153860 lncRNA upstream 13900 12011997 ~ 12016084 (+) False AMCG00002360
TU153790 lncRNA upstream 131301 11894628 ~ 11898683 (+) True AMCG00002355
TU153714 lncRNA upstream 172658 11856478 ~ 11857326 (+) True G122592
TU153666 lncRNA upstream 313283 11716355 ~ 11716701 (+) True G122549
TU153621 lncRNA upstream 317897 11710450 ~ 11712087 (+) False AMCG00002339
TU153898 lncRNA downstream 59653 12104670 ~ 12105523 (+) True G122737
TU153905 lncRNA downstream 83363 12128380 ~ 12129678 (+) True G122743
TU153906 lncRNA downstream 84861 12129878 ~ 12130747 (+) True G122744
TU154008 lncRNA downstream 327784 12372801 ~ 12373031 (+) True G122829
TU154010 lncRNA downstream 359925 12404942 ~ 12411141 (+) True G122830
AMCG00002361 mRNA upstream 2935 12025002 ~ 12027049 (+) True AMCG00002361
AMCG00002360 mRNA upstream 13931 12011971 ~ 12016053 (+) True AMCG00002360
AMCG00002364 mRNA upstream 37027 11990957 ~ 11992957 (+) True AMCG00002364
AMCG00002362 mRNA upstream 46548 11967375 ~ 11983436 (+) True AMCG00002362
AMCG00002356 mRNA upstream 70179 11933625 ~ 11959805 (+) True AMCG00002356
AMCG00002366 mRNA downstream 1785 12046802 ~ 12051713 (+) True AMCG00002366
AMCG00002365 mRNA downstream 15739 12060756 ~ 12075382 (+) True AMCG00002365
AMCG00002369 mRNA downstream 34946 12079963 ~ 12081582 (+) True AMCG00002369
AMCG00002370 mRNA downstream 36609 12081626 ~ 12087824 (+) True AMCG00002370
AMCG00002372 mRNA downstream 56789 12101806 ~ 12104566 (+) True AMCG00002372
TU153704 other upstream 193815 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 335819 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 399092 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 652246 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 1435680 10567912 ~ 10594304 (+) False AMCG00002294
TU153909 other downstream 88769 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 1013056 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 1080361 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 4913144 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 5870419 17915436 ~ 17984730 (+) True G123807

Expression Profile