RNA id: AMCG00002367


Basic Information

Item Value
RNA id AMCG00002367
length 2058
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00002367
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12055641 ~ 12060552 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGTCATCACGCTTACGCCGCCAACGGGACGAGCTGAGGTGCAAACGACATTTTGCAGTGGCTGCTGCATGGCTGGTGCTGTTGTTTGCGCTCGGCATGGCGGTGGTCATCCGTTTACAGGGGCTCAGAATCAGTGCTGGTTCTGAGGATATACGCAGTTTCTTCACTGGACTGAAAATCCCTGATGGTGGGGTGCACATTATTGGTGGAGACCTCGAAGaagcttttattatatttgcCTCCGATGAAGATGCAAGGCGTGCCATGATCCGCTCAGGAGGATGCATTAAAGGGTCTCCGGTTCATCTCCAACTAAGCAGCaagacagaaatgcaaaatgttcttGAAGCAAGTGCAAAAAAACCAGAAGCAAGTAAAAGAAGGATTTATAATGAAAGGCCAGGATTCAGAAGGTCTGAAACCAAGACAGTCCCTTCAGCCTTTACAAAAAATCTGTCGGTGGAGGTCAGAAGAATGGACCCTCTGGGTATGGCTGCTGTTTCAGGCCCAAGTGCTTCGGGTCCGAATAGTATTCGCCCACCAAGGAAGGTGATTCCAAACAATAATGATGGCTTCTACTTGCATTTACATGGAATGCCATTTTCTGCTACAGAAGTAGATGTTAGAAGGTTTTTCCAAGGTTTAGATGTGGAGGATGTCCTTTTGATGAAAAACCACCGTGGACAAAATAATGGGAGGGGTATTGTTAAGTTTTCATCTCTGCATGATGCAAATGAGGGCCTTAAACTGGACCGTGAGTACATTGGGTCTCGATTTGTTGAAGTGAATTCCTGTACAGAGAAAGAGTGGATAAATGCAGGGGGTCATGTAGGACCACTTGTAGATAAAGCTGTTGGGTATGAACCAGGGCCATCAGCATCTTATCTAGAAAGATATTCCAAAGAGAAGTCGAGGTCTAGGTCGCCAGTGGATTGCAGATCCCGATCGTCTTCACCTTCTAATGAGGAGTATTGTGTGCTGGTGGAAAACCTTTCATACTCTGTTGAAAAGAGTGATATTAAGAATTTCTTCCAGCCTGTGGTCTTGCATGATGACCAGGTTCTGCATTTGCATGACAAGAATGGGAAAAGAACAAGGGCAGCTTTTGTGCTGTTCAAGAGTCTGAGGGATTACTGCTCTGGCTTAGGACGCCACAAAGAAAGCCTGGCCCACCGTACGACATACGTTTCCCCCATTTCGAAGGAGAAAATGGTGGAAATGCTAGACTCTATGGAGCAGAAGTTGGAGGAGTACCGTGAAAGGTCTAGTAGATCCCGTGAAAAATCTCAGCGTTCACAAAGAAGCAATTACCTGTCTGAACGGGTATGCATTTATGTGCGAAACCTGCCTTTCGATGTGCGCAAAGTGGAGGTTAAGGACTTCTTCCAGAACTTTGGGATATCTGAGTTTTGCATTCACTTGCTCTTTGATGACAAAGGAAACGGTCTTGGCGAGGCTTTGGTAAAATTTGAGTCTGAGGAAGAGGCAGCAAAGGCGGAATATTTGAATGGGCAGAGGTTTCTTGGATCTGAGGTGATGCTGAAACGCATTTCAAGAGAACAAATGCAGGAATTTGGTGTTCCAGATTTTTTAAGCCAGGACCAACCAAGAGAGGATAGTCCTCTGGTATACCTAAGTCAGAATGAGAAATCAAAATTTTCTGATATTCCTCAAGCTGCTCCCACTCTGAAGGACTTGCCAAATTCTGTGGGAAGCGGCAATGCTTTTGATTCAGGAATGAACAACTCTGATGTGTTCTTTGATGGAGGAGGTGGTCCTGGACACAGTGGATTTGGTAATCCCGGACAATATGATGGCCCTACGTGTTTGAAGCTGATTAATTTACCTCTAAAAATAACTATAGATGAAATCTATGACTTCTGCTATGGGTACCGTGTCATTCCAGGGTCTGTTTCATTACAGTACACCAGAAAAGGTATTCCAAAAGGTTCTGCGACTGTTGTTTTTCAAACCTGGCGAGAAGCGAAGACCGCATTGCAAGAACTAAGCGGAAGACCAATTGGAACCCGTAAAATTCGCTTAAGTTTTGTTTAA

Function

GO: NA

KEGG:

id description
K24526 RBM12; RNA-binding protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153878 lncRNA downstream 10622 12043315 ~ 12045019 (-) True G122726
TU153768 lncRNA downstream 184262 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 191585 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 196316 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 207449 11847081 ~ 11848192 (-) True G122633
TU153975 lncRNA upstream 135368 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA upstream 181569 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 940289 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 991474 13052026 ~ 13052390 (-) True G122869
TU154065 lncRNA upstream 1006669 13067221 ~ 13067627 (-) True G122877
AMCG00002368 mRNA downstream 49289 11996026 ~ 12006352 (-) False AMCG00002368
AMCG00002359 mRNA downstream 137541 11913110 ~ 11918100 (-) True AMCG00002359
AMCG00002358 mRNA downstream 142626 11905910 ~ 11913015 (-) True AMCG00002358
AMCG00002357 mRNA downstream 162942 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002351 mRNA downstream 183365 11871104 ~ 11872276 (-) False AMCG00002351
AMCG00002373 mRNA upstream 21559 12082111 ~ 12096642 (-) True AMCG00002373
AMCG00002377 mRNA upstream 38772 12099324 ~ 12100920 (-) True AMCG00002377
AMCG00002375 mRNA upstream 63646 12124198 ~ 12139756 (-) True AMCG00002375
AMCG00002376 mRNA upstream 79453 12140005 ~ 12142344 (-) True AMCG00002376
AMCG00002374 mRNA upstream 84594 12145146 ~ 12171681 (-) True AMCG00002374
TU153859 other downstream 49290 11995828 ~ 12006351 (-) True AMCG00002368
TU153773 other downstream 182779 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 200750 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 321317 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 370552 11667755 ~ 11685089 (-) False AMCG00002327
TU154046 other upstream 967645 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 967645 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1588676 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 2880708 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 4775604 16836156 ~ 16839722 (-) True G123585

Expression Profile