RNA id: TU153859


Basic Information

Item Value
RNA id TU153859
length 3424
RNA type TUCP
GC content 0.39
exon number 5
gene id AMCG00002368
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11995828 ~ 12006352 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGCAGGAGCGCATTGAGTGGGATGGGGAGAGCCAGGGCAGTTCGGTGCAGAAGAACCAAAGAGAAGCACAGCGAGCCTCGTCCCGGACGATTGAAAACGCACCTACCTCGAGTGTTTTCCCACTCCCTTTCTTAAAAGCGACACCcccctttacacacacacacattgcactgGGCTCTTGAGAAGATGCACACGACGCAGAAGGACACCACCTACACCAAGATCTTCGTGGGGGGGCTGCCGTACCACACCACGGACTCCAGCCTGCGCAAGTACTTCGAGGTGTTCGGCGAGATCGAGGAGGCGGTGGTCATCACGGACCGGCAGACCGGCAAGTCCCGCGGCTACGGATTCGTCACCATGGCTGACAGAGCTGCAGCTGAAAGGGCTTGCAAGGATCCCAATCCTATCATAGATGGCAGGAAAGCAAATGTAAATCTGGCATACTTAGGTGCCAAACCAAGGGTAATGCAACCAGGTTTTACCTTTGGTGTTCAACAAATCCACCCTGCATTCATCCAGAGACCGTATGGGGTCGTTTACAGTTAAGATAACTGATGTCATGAGAAGGATTTGATGATATGAGGTGGAATAGCTGTGTTCCGCATTGAGCAGATCTTAAACTGTTACCAGTagactcaaacacacacaaacaagctaAAATGGATCCCTGCTCATTATGTCTATCCTCAGGCTTTTGTGCAGCCCAGCGTTGTTATCCCACATGTTCAGCCCGCTGCAGCCGCAGCAGCGGCAGCCACTTCTCCGTACATCGACTATACTGGTGCCGCATATGCACAGTATTCTGCCGCTGCCAATGCAGCTGCAGCTGCCTACGAACAGTACCCCTATGCAGCTTCCCCGGCAGCAACTGGGTACATGACCACGGCTGGGTACGGCTATGCAGTCCAGCAGCCCCTGACAGCTGCGGCTCCCGGTTCGGCCGCCGCTGCCGCCGCTGCCTTTGGCCAGTACCAGCCACAGCAACTGCAGACCGATCGCATGCAATAACAGCTGGACCTCCGGAATAAGAGCGATGGTGATGGCCTTGTGAGCAGGAAGAGGTGTAGGGTCATATTCCTTAGCTTTACAACTTGCAGTGATACTAAAAGCAAGGCAGTATGAAATAAGGAGCTGAAGATtacttcttttgttttattttatcatggtGATAGTtataaaaagtgaaacaaaaacaaacacctgtGCTGTATAAGTAGGTTCGATCATTAATGTCAATGAAAAGTATCTAAGTATTtgaattaacacacacaaaaactgctTTATTGCATTCTGAAGCTCTACTTTCACTgctcaataaatacaataagtgcaGCCCTGCAGAAGTACCACTGAAGACGCGTCTCACTGTTTTTGCAGCTGGAGAGACGAGTATTCAGTTaactcttattttatttactaaagCAGAGCTCCAAATTGTGTAAAAGCAAACCAATGCTGCATAAGTTTAATACTAATAAGGAAATAGTGCTATCTTTTACACAATAAGTAGAGGAAAGAAATGTCTGTTATAACTGTCCCTTATAATTAAGTAAAGtccagtttcatttatttatttatatttatttatttgtttatttattattatgattgaaAGGGCTCTCATTCTTCATAACTGCATTGCCTTTTTCCAGTTATCAGGGAAAGAAAgtattttccaattaatttaaagactCTGCAGATCAGGGAATAGTAGAAGTAATCATGCaaactaattatacaaaatgctGTAGCTCATATTGTAAGCAAAAAAACTGCCTTTCATCTTCCAAATGCTGAATGTCCTTTATGGCTTTCATCTTGacctatgcatttattttttatttttaggacaTTTTGATATCTCTCTTTAAAGGGCATCGAACAATTTTAAGGCACTCtagtaaaacaaagtaaagcaccaaaaaaaaacaaaaaggcaccaacattgttttctttctcgtTCTCTGCATGAGTGGAACTCGGGAGCGAACGATGTGGAATAAAAACGGTGCAACAGCTGTCCGGACAATCAATAACACAGACAGCTCTGGAAAGAACGCATCACTTGTGCTTATGTGATGAGCTGTCACGTTTTAATCCCTCTCCCCGTCCGTTTGGGAAACTTTAACTGCTGGTGTCAGCTATTCCAATTCTGCAACAGGATCAGCCCTTGACGACAACAGACTTGTCTTTCTATTTATTGCACCTGTCcagagcattttttttgtttctttctgaatgaaatgcaagagaggaaaaacaaaatgtgaagctTAACCCTTTAAAACCTGCTGTTTTGTTCAACATTAATAATCACACacccatttgtattttaatttttttatgtgtatatcTACCATACAGCTGCATCttaaaaggttaaaaatatTCCTGTGCAcccagaaaacacatttatgaaatcgcttgttgtgtttaaaaacagCACTGACGTTTTAAAGGGTTAAATACTAGTCTGTGGTTCTTACTGTGccttataatatttgtaatactatttatgagaaaatatatttattttgaaagttgtTGCGCACTGAGTAAGGAAACTTAGCTGTGATACTGTATAAATTAATCTTATGTATTCATCTCATGGCATATAAATTATGAAATAGGTTTTAGGTGTAgtataattaatattcattCGAAAATGTTGACTAGGGTTATTTAAGATCCAAAATGTATGTGcactgtacaatatatttttgcctttgAATTTTAGAAcgacattaaatattttctagTTCAATGCCTtttctattaaacattttaaatgcaggcCTGTTGCCCAGAAGGTATGTATCTCTGCTCGTGTTTAGAAACctagaaatgaaaaatgacacacacacacaaacagacaaaactaatgataaaattaattgcaaaatgctgctttatatgttagaatgtattgtCTTGTAAAGTGTGAACATCTGTGCTTTTATTGTTGATCTTTATCAAATGGACTATTTTACACTGTTGAGAATTTTTATACTTGAACAATTTCTTACAAgggaaaaaacataatgaaaaaatatatatatactttttaaggAGCCTTTTCATTGTGACTGGATTATGTAAAGTATTTGCGGAATTCCAGTGTTATACAATTAAACTGCAATGGTCCttttgatattaatattatttcagaaTCTCAATAGTATATACTctcagttaaataaaaatgatatatataaatcatattattGTGGCATTCATTCATTGGGAAATGGTTTGAAATCAAATAGGTCTCTGTTTGATGGAAAGGAAATCTGGGTTGCTATTCCCATAGAAATGCAAcagaattcattattttatttgatgttttcgTTGTGAAATGGACAGCCATTCGCAAATCCGGTTTGGTTTGAAATGGcgtgttttaaattgaaagagGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153768 lncRNA downstream 124449 11869607 ~ 11871379 (-) True AMCG00002351
TU153748 lncRNA downstream 131772 11862903 ~ 11864056 (-) True G122621
TU153766 lncRNA downstream 136503 11857391 ~ 11859325 (-) True G122636
TU153762 lncRNA downstream 147636 11847081 ~ 11848192 (-) True G122633
TU153761 lncRNA downstream 150157 11844392 ~ 11845671 (-) True G122632
TU153878 lncRNA upstream 36964 12043315 ~ 12045019 (-) True G122726
TU153975 lncRNA upstream 189569 12195920 ~ 12243914 (-) False G122801
TU153974 lncRNA upstream 235770 12242121 ~ 12243914 (-) True G122801
TU154042 lncRNA upstream 994490 13000841 ~ 13005335 (-) True G122858
TU154056 lncRNA upstream 1045675 13052026 ~ 13052390 (-) True G122869
AMCG00002359 mRNA downstream 77728 11913110 ~ 11918100 (-) True AMCG00002359
AMCG00002358 mRNA downstream 82813 11905910 ~ 11913015 (-) True AMCG00002358
AMCG00002357 mRNA downstream 103129 11882073 ~ 11892699 (-) True AMCG00002357
AMCG00002351 mRNA downstream 123552 11871104 ~ 11872276 (-) False AMCG00002351
AMCG00002345 mRNA downstream 126476 11864614 ~ 11869352 (-) True AMCG00002345
AMCG00002367 mRNA upstream 49290 12055641 ~ 12060552 (-) True AMCG00002367
AMCG00002373 mRNA upstream 75760 12082111 ~ 12096642 (-) True AMCG00002373
AMCG00002377 mRNA upstream 92973 12099324 ~ 12100920 (-) True AMCG00002377
AMCG00002375 mRNA upstream 117847 12124198 ~ 12139756 (-) True AMCG00002375
AMCG00002376 mRNA upstream 133654 12140005 ~ 12142344 (-) True AMCG00002376
TU153773 other downstream 122966 11871862 ~ 11872862 (-) False AMCG00002351
TU153763 other downstream 140937 11848470 ~ 11854891 (-) True AMCG00002350
TU153720 other downstream 261504 11731617 ~ 11734324 (-) True G122597
TU153660 other downstream 310739 11667755 ~ 11685089 (-) False AMCG00002327
TU153575 other downstream 468473 11524893 ~ 11527355 (-) False AMCG00002317
TU154046 other upstream 1021846 13028197 ~ 13029406 (-) False G122862
TU154047 other upstream 1021846 13028197 ~ 13029406 (-) True G122862
TU154299 other upstream 1642877 13649228 ~ 13654236 (-) False AMCG00002421
TU154543 other upstream 2934909 14941260 ~ 14946311 (-) True G123263
TU154950 other upstream 4829805 16836156 ~ 16839722 (-) True G123585

Expression Profile