RNA id: AMCG00002369


Basic Information

Item Value
RNA id AMCG00002369
length 1620
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00002369
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 12079963 ~ 12081582 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGTGACCTCCCAGCTATTTGCAGTGCTTCGCAGCGGGGAGATCAGAAGGATATGCTGCTCGGCCTTTCAGTGCCCCGTTCAGCACCGATGCCGTCAGTCACTGCCGCACTCCTCGAACAGTGTAAAGCTCGTGCAAGGGAAAACGACCCGTGCAGCAGCTTTAGGATCAAGCCAGTGGGGCATTCAGTCACGCAGCTATAGATCTTCTTCAGAGAGATGCTACAACCTGACCCCCCCTCAAGTGAACAGCATCCTGAAGGCCAACGAGTACAGCTTTAAAGTCCCAGAGTTCGATGGGAAGAATGTGAGCTCTGTGCTCGGCTTTGACAGCAACCAGCTGCCAGCCAATGCGCCAATCGAGGATCGGAGGAGTGTTGCCACTTGCCTGCAGACAAGGGGGATGCTCTTGGGGGTGTTTGATGGGCATGCTGGCTGTGCTTGTGCCCAGGCATTGAGTGAGAGGCTGTTCTACTATATTGCAGTCTCTCTGCTTCCTCACGAGACATTGCTGGAAATCGAAAATGCTATGGAGAGCGGGCGGGCTGTGTTACCCATCTTGCAGTGGCACAAGCATCCCAATGATTACTTCAGCAAGGAAGCTTCCAGATTATATTTCAACAGCCTGAGAACGTATTGGCAGGAACTAATTGATTTAAACAGTGGAGAGAACCCTGACATTAAAGAAGCTTTGATCAACTCCTTCAAAAGACTAGATAATGATCTTTCATTGGAAGCTCAAGTGGGAGATACTAACTCATTCCTCAATTATTGGGTCCTCCGTGTGGCCTTCTCGGGAGCCACGGCCTGTGTCGCCCACGTTGATGGCAACGATCTGCACGTGGCCAACACTGGAGATGGCCGGGCTGTGCTTGGGGTGCAGGAGGAAGATGGGTCGTGGTCAGCACTCACCTTATCAAATGACCACAATGCACAGAACGAGAGCGAGATCCAGCGCATTCGATCTGAGCATCCCAAGAACGAGGAGAAGACGGTCGTCAAACAGGACCGCCTGCTTGGTCTACTGATGCCCTTCAGAGCCTTCGGAGACGTGAAATTCAAGTGGAGCATTGAGCTTCAGAAGCGAGTGCTCGAGTCTGGGCCCGATCAGCTTAACGATAATGAGCACACCAAGTTCATCCCACCAAACTACCACACTCCCCCGTACCTCACTGCCGAGCCTGAAATCATCCATCACAAGCTAAGGCCCCAGGACAGGTTCCTGGTGTTGGGGACCGATGGACTGTGGGAGACCTTACACCGGCAAGAAGTGGTGAGGATCGTAGGTGAATATCTCACTGGGGTTCACCTCCAGCAGCCCATCACTGTGGGAGGCTACAAGGTGACACTTGGGCAGATGCAGGGCTTGCTCATGGAGCGAAGGGCACGGGTATCCTCCGTCTTTGAGGATCAGAACGCAGCGACTCATCTCTTAAGGCACGCAGTAGGGAATAATGAGTTTGGCTCAGTGGACCATGAACGTCTCTCCAAAATGCTGAGCTTGCCAGAGGAGCTGGCGCGTATGTACAGAGATGACATCACCATCATAATTGTTCAGTTTAACTCCCATGTTATTGGTGCACAGAATAAGACGGGGACGACAGGTGATCCTGCCTAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0046872 metal ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG:

id description
K01102 PDP; pyruvate dehydrogenase phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU153860 lncRNA upstream 63879 12011997 ~ 12016084 (+) False AMCG00002360
TU153790 lncRNA upstream 181280 11894628 ~ 11898683 (+) True AMCG00002355
TU153714 lncRNA upstream 222637 11856478 ~ 11857326 (+) True G122592
TU153666 lncRNA upstream 363262 11716355 ~ 11716701 (+) True G122549
TU153621 lncRNA upstream 367876 11710450 ~ 11712087 (+) False AMCG00002339
TU153898 lncRNA downstream 23088 12104670 ~ 12105523 (+) True G122737
TU153905 lncRNA downstream 46798 12128380 ~ 12129678 (+) True G122743
TU153906 lncRNA downstream 48296 12129878 ~ 12130747 (+) True G122744
TU154008 lncRNA downstream 291219 12372801 ~ 12373031 (+) True G122829
TU154010 lncRNA downstream 323360 12404942 ~ 12411141 (+) True G122830
AMCG00002365 mRNA upstream 4581 12060756 ~ 12075382 (+) True AMCG00002365
AMCG00002366 mRNA upstream 28250 12046802 ~ 12051713 (+) True AMCG00002366
AMCG00002363 mRNA upstream 34946 12029984 ~ 12045017 (+) True AMCG00002363
AMCG00002361 mRNA upstream 52914 12025002 ~ 12027049 (+) True AMCG00002361
AMCG00002360 mRNA upstream 63910 12011971 ~ 12016053 (+) True AMCG00002360
AMCG00002370 mRNA downstream 44 12081626 ~ 12087824 (+) True AMCG00002370
AMCG00002372 mRNA downstream 20224 12101806 ~ 12104566 (+) True AMCG00002372
AMCG00002371 mRNA downstream 24607 12106189 ~ 12121777 (+) True AMCG00002371
AMCG00002378 mRNA downstream 122439 12204021 ~ 12211319 (+) True AMCG00002378
AMCG00002379 mRNA downstream 145267 12226849 ~ 12241355 (+) True AMCG00002379
TU153704 other upstream 243794 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 385798 11688600 ~ 11694165 (+) True AMCG00002331
TU153583 other upstream 449071 11629012 ~ 11630892 (+) True G122482
TU153483 other upstream 702225 11376940 ~ 11377738 (+) False AMCG00002311
TU153306 other upstream 1485659 10567912 ~ 10594304 (+) False AMCG00002294
TU153909 other downstream 52204 12133786 ~ 12140465 (+) True G122746
TU154058 other downstream 976491 13058073 ~ 13061685 (+) False AMCG00002388
TU154081 other downstream 1043796 13125378 ~ 13129697 (+) True AMCG00002393
TU154987 other downstream 4876579 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 5833854 17915436 ~ 17984730 (+) True G123807

Expression Profile